Locus 4463

Sequence ID 2R_DroMel_CAF1
Location 14,678,077 – 14,678,169
Length 92
Max. P 0.701370
window7137

overview

Window 7

Location 14,678,077 – 14,678,169
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -14.33
Consensus MFE -9.48
Energy contribution -9.70
Covariance contribution 0.22
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.66
SVM decision value 0.35
SVM RNA-class probability 0.701370
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14678077 92 - 20766785
AAUCAUAACAUUUACAUACACACCGGACCGGACCG-UGUGUGUGGCCGUCAUAUAACUAGGUAUUUCAUAUACUCUAUAUAAUCAUAUAUA---UC--
..............(((((((((.((......)))-)))))))).......((((..(((((((.....)))).)))))))..........---..-- ( -17.90)
>DroPse_CAF1 8732 89 - 1
AAUCAUAACAUUUACAUACGCCUCC-----GACUGACGCGUCUGGCCGCCAUAUAACUAGGUAUUCCAUAUAAUCUAUAUACUCAUA--C--UCGUAC
................((((((...-----(((......))).))).(((.........))).........................--.--..))). (  -9.00)
>DroEre_CAF1 7764 80 - 1
AAUCAUAACAUUUACAUACACACCG-----GACCG-UGUGUGUGGCCGCCAUAUAACUAGGUAUUUCAUAUACUCUAUAUAAUCAU------------
..............(((((((((..-----....)-)))))))).......((((..(((((((.....)))).))))))).....------------ ( -15.80)
>DroYak_CAF1 7900 80 - 1
AAUCAUAACAUUUACAUACACACCG-----GACCG-UGUGUGUGGCCGCCAUAUAACUAGGUAUUUCAUAUACUCUAUAUAAUCAU------------
..............(((((((((..-----....)-)))))))).......((((..(((((((.....)))).))))))).....------------ ( -15.80)
>DroAna_CAF1 6805 84 - 1
AAUCAUAACAUUUACAUACACACCU-----AACCG-UGUGUGUGGCCGCCAUAUAACUAGGUAUUCCAUAUACUCUAUAUA----UA--UACUCGC--
..............(((((((((..-----....)-))))))))......(((((..(((((((.....)))).)))..))----))--)......-- ( -17.50)
>DroPer_CAF1 14811 89 - 1
AAUCAUAACAUUUACAUACGCCUCC-----GACUGACGCGUCUGGCCGCCAUAUAACUAGGUAUUCCAUAUAAUCUAUAUAUUCAUA--C--UCGUAC
................((((((...-----(((......))).))).............(((((...(((((.....)))))..)))--)--).))). ( -10.00)
>consensus
AAUCAUAACAUUUACAUACACACCG_____GACCG_UGUGUGUGGCCGCCAUAUAACUAGGUAUUCCAUAUACUCUAUAUAAUCAUA_______G___
..............((((((((.(..........).))))))))(((............))).................................... ( -9.48 =  -9.70 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:20 2006