Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,669,693 – 14,669,800 |
Length | 107 |
Max. P | 0.612670 |
Location | 14,669,693 – 14,669,800 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 87.06 |
Mean single sequence MFE | -36.40 |
Consensus MFE | -26.60 |
Energy contribution | -27.85 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.08 |
Mean z-score | -1.57 |
Structure conservation index | 0.73 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14669693 107 + 20766785 CUCACGUCUUUUAAUUGUCAUGCCAUUUGGGAA-----UCGUCUGAAGC------GACUGUGAGUCAGGUUGUGGUCUCUCCAUCUACCUGGCCAUUAUGCUCGGUUCCCAG-CUCGGG ......................((..(((((((-----(((.....(((------(...(((.(((((((.((((.....))))..))))))))))..))))))))))))))-...)). ( -35.70) >DroSim_CAF1 24370 105 + 1 CUCACGUCUUUUAAUUGUCAUGCCAUUUGGGAA-----UCGUCUGAAGC------GACUGUGAGUCAGGUUGUGGUC--UCCAUCUACCUGGCCAUUAUGCUCGGUUCCCAG-CUCNNN ..........................(((((((-----(((.....(((------(...(((.(((((((.((((..--.))))..))))))))))..))))))))))))))-...... ( -32.50) >DroEre_CAF1 24700 108 + 1 CU--GGUCUUUUAAUUGUCAUGCCAUUUGGGGAUCGGAUCGUCUGCAGC------GACUGUGAGCCAGGCUGUGGUC--UCCAUCUACCUGGCCAUUAUGCUCGGUUCCCAG-CUCGGG ((--((((((..(((.(.....).)))..))))))))...........(------(((((.(((((..((.((((((--...........))))))...))..))))).)))-.))).. ( -35.00) >DroYak_CAF1 24858 115 + 1 CU--AGUCUUUUAAUUGUCAUGCCAUUUGGGGAUCGGAUCGUCGGUAGCGUCGACGACUGUGAGCCAGGUUGUGGUC--UCCAUCUACCUGGCCAUUAUGCUCGGUUCCCAGUCUCGGG ..--..................((..(((((((((((.(((((((.....)))))))..(((.(((((((.((((..--.))))..)))))))))).....)))))))))))....)). ( -42.40) >consensus CU__CGUCUUUUAAUUGUCAUGCCAUUUGGGAA_____UCGUCUGAAGC______GACUGUGAGCCAGGUUGUGGUC__UCCAUCUACCUGGCCAUUAUGCUCGGUUCCCAG_CUCGGG ...........................(((((((((....(((............))).(((.(((((((.((((.....))))..))))))))))......)))))))))........ (-26.60 = -27.85 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:14 2006