Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,565,068 – 2,565,276 |
Length | 208 |
Max. P | 0.965530 |
Location | 2,565,068 – 2,565,166 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 74.23 |
Mean single sequence MFE | -19.57 |
Consensus MFE | -11.50 |
Energy contribution | -11.25 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.23 |
Mean z-score | -1.74 |
Structure conservation index | 0.59 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2565068 98 + 20766785 GAUACAUCAACUAAAUUCACAUAAUAUUUAUAUGUCCUCCGGUAGUAUGUGAUCUGCCUGCUGAUCCUGCUGUGCCUGCAGAUUUAUAUUAUCGCGGC ..................(((((.......)))))((..((((((((((.(((((((..((............))..))))))))))))))))).)). ( -21.30) >DroPse_CAF1 1936 91 + 1 AA----UGAUCACAUCUGACAUUAUCUUUC---CCUUCCUCCCAGUAUGUGAUCUGCCUCUUGAUCCUGCUCUGCCUGCAGAUCUACAUCAUUGCUGC ..----.(((((((((((............---.........))).)))))))).((....((((...(.((((....)))).)...))))..))... ( -19.10) >DroSec_CAF1 2179 95 + 1 GAUACAUCAACUAAAUUCACAUAAUAUUUA---AUCCUCCGGUAGUAUGUGAUCUGCCUGCUGAUCCUGCUGUGCCUGCAGAUCUACAUUAUCGCGGC ..............................---..((..(((((..(((((((((((..((............))..))))))).))))))))).)). ( -19.20) >DroEre_CAF1 2154 93 + 1 AGUAUUUAGUAAUAUGCAA--UAAUCUUUA---AUUCUCUGCUAGUAUGUGAUCUGCCUGCUGAUUUUGCUGUGCCUGCAGAUUUACAUAAUCGCCGC .((((........))))..--.........---.......((...((((((((((((..((............))..))))).)))))))...))... ( -17.90) >DroYak_CAF1 2314 95 + 1 GAUAUGUAAUCAAAAUCAAAUUAAUAUUAA---AUACUCUGGUAGUAUGUGAUCUGCCUGCUAAUCCUGCUGUGCCUGCAGAUCUACAUAAUCGCCGC (((.....)))...................---.......(((..((((((((((((..((............))..))))))).)))))...))).. ( -20.80) >DroPer_CAF1 1936 91 + 1 AA----UGAUCACAUCUGACAUUAUCUUUC---CCUUCCUCCCAGUAUGUGAUCUGCCUCUUGAUCCUGCUCUGCCUGCAGAUCUACAUCAUUGCUGC ..----.(((((((((((............---.........))).)))))))).((....((((...(.((((....)))).)...))))..))... ( -19.10) >consensus AAUA__UAAUCAAAAUUAACAUAAUAUUUA___AUUCUCUGCUAGUAUGUGAUCUGCCUGCUGAUCCUGCUGUGCCUGCAGAUCUACAUAAUCGCCGC ..............................................(((((((((((..((............))..))))))).))))......... (-11.50 = -11.25 + -0.25)
Location | 2,565,166 – 2,565,276 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -44.32 |
Consensus MFE | -21.23 |
Energy contribution | -21.87 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.32 |
Mean z-score | -2.48 |
Structure conservation index | 0.48 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2565166 110 - 20766785 ------GACUUACCUUUUGCUCAAGGAGCGAUAUGCGCUCCACAUUGGUCCUUUGAUCAGCCCAGGUGGCCAGGAAAUCCUUCUUGGAUCGCUCCACGUAGUCCGUGGAGUGGGCU ------...((((((...((....((((((.....))))))....(((((....)))))))..))))))(((((((....))))))).((((((((((.....))))))))))... ( -44.20) >DroPse_CAF1 2027 116 - 1 UCUCCCCACUCACCUUCUGCUCGAUGAGGGAGAGGCGCUCGACAUUGGUUCUGGGAUCUGACCAGAGGGCCAGGAACUCGCUCCGCGACCUCUCCACAUAGUUCGUUGAGUGGGCU ....((((((((.(....(((..(((..((((((((((.......(((((((((.......)))))..))))(((......)))))).))))))).))))))..).)))))))).. ( -48.60) >DroSec_CAF1 2274 107 - 1 ---------UUACCUUUUGCUCGAGGAGCGAUAUGCGUUCCACAUUGGCCCUUUGAUCAGCCCAGGUGGCCAGGAAGUCCUUCUUGGAUCGCUCCACGUAGUCCGUGGAGUGGGCU ---------...............((((((.....)))))).....(((((...((((.(((.....)))((((((....))))))))))((((((((.....))))))))))))) ( -43.00) >DroEre_CAF1 2247 108 - 1 --------CUUACCCUUUGCUCGAGGAGCGCUAUCCGCUCCACACUGUCCCUUUGAUCAGCCCAGCUGGCCAGGAAGUCCUUCCUGGAGCGCUCUACGUAGUCCGUAGAGUGGGCU --------................((((((.....)))))).................(((((.(((..(((((((....))))))))))((((((((.....))))))))))))) ( -44.30) >DroAna_CAF1 2835 110 - 1 ------CCAUUACCUUUUGUUCAAUGAAGGAGAUGCGCUCUGCAUUAGCCUUUUGAUCGGCCCAGAGCCCGAGGAAAUCCCUCUUCGAGCGCUCCACAUAGUCCGUGGAAUGGGCA ------(((((.((...((..(.(((..((((.(((((((((.....(((........))).)))))).((((((......)))))).))))))).))).)..)).)))))))... ( -37.20) >DroPer_CAF1 2027 116 - 1 UCUCCCCACUCACCUUCUGCUCGAUGAGGGAGAGGCGCUCGACAUUGGUUCUGGGAUCUGACCAGAGGGCCAGGAACUCGCUCCGCGACCUCUCCACAUAGUUCGUUGAGUGGGCU ....((((((((.(....(((..(((..((((((((((.......(((((((((.......)))))..))))(((......)))))).))))))).))))))..).)))))))).. ( -48.60) >consensus ______CACUUACCUUUUGCUCGAGGAGCGAGAUGCGCUCCACAUUGGCCCUUUGAUCAGCCCAGAGGGCCAGGAAAUCCCUCCUCGACCGCUCCACAUAGUCCGUGGAGUGGGCU ........................((((.(.....).))))..................(((((..(((((((((......)))))).)))((((((.......))))))))))). (-21.23 = -21.87 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:46 2006