| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,664,433 – 14,664,540 |
| Length | 107 |
| Max. P | 0.707486 |
| Location | 14,664,433 – 14,664,540 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 93.22 |
| Mean single sequence MFE | -37.54 |
| Consensus MFE | -34.34 |
| Energy contribution | -34.38 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14664433 107 - 20766785 -GGUAACUGGUUUUGGGGCCAGGCUUUGUCUGCUUUUUUUUCCACUCAUUUGUGGAACUCCCGAGUAGGGACUUUUGGCCGCGGGGUUUUGGGACCUGUGCGCA-CUCA -.(((...(((((..(((((.((((..((((((((....((((((......)))))).....))))..))))....))))....)))))..)))))..)))...-.... ( -38.40) >DroSec_CAF1 18937 107 - 1 UGGUAACUGGUUUUGGGGCCAGGCUUUGUCCGCGUUU-UUUCCACUCAUUUGUGGGACUUCCGAGUAGGGACUUUUGGCCCCGGGGUUUUGGGACCUGUGCGCA-CACA .(((..(.((..(((((((((((....((((.((...-.((((((......))))))....)).....)))).)))))))))))..))..)..))).(((....-))). ( -38.50) >DroSim_CAF1 18993 107 - 1 UGGUAACUGGUUUUGGGGCCAGGCUUUGUCCGCGUUU-UUUCCACUCAUUUGUGGGACUCCCGAGUAGGGACUUUUGGCCCCGGGGUUUUGGGACCUGUGCGCA-CACA .(((..(.((..(((((((((((..............-.((((((......)))))).((((.....))))..)))))))))))..))..)..))).(((....-))). ( -38.90) >DroEre_CAF1 19219 104 - 1 UGGUAACUGGUUUUGGGGCCAGGCUUUGUCUGCGUUU-UUUCCACUCAUUUGCGGGACUACCGAGUAGGGACUUUUGGCC-UGGGGUUUUGGGACCUGUGCGC---ACA ..(((...(((((..((((((((((..((((......-.((((.(......).))))((((...))))))))....))))-)..)))))..)))))..)))..---... ( -34.00) >DroYak_CAF1 19253 105 - 1 --GUAACUGGUUUUGGGGCCAGGCUUUGUCUGCGUUU-UUGCCACUCAUUUGUGGGACUCCCGAGUAGGGACUUUUGGCC-UGGGGUUUUGGGACCUGUGCGCAGCACA --......(((((..((((((((((..(((((((...-.)))(((......)))))))((((.....)))).....))))-)..)))))..))))).((((...)))). ( -37.90) >consensus UGGUAACUGGUUUUGGGGCCAGGCUUUGUCUGCGUUU_UUUCCACUCAUUUGUGGGACUCCCGAGUAGGGACUUUUGGCC_CGGGGUUUUGGGACCUGUGCGCA_CACA ..(((...(((((..(((((.((((..((((.........(((((......)))))(((....)))..))))....))))....)))))..)))))..)))........ (-34.34 = -34.38 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:07 2006