Locus 4457

Sequence ID 2R_DroMel_CAF1
Location 14,659,185 – 14,659,297
Length 112
Max. P 0.578822
window7122

overview

Window 2

Location 14,659,185 – 14,659,297
Length 112
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 91.34
Mean single sequence MFE -18.70
Consensus MFE -14.78
Energy contribution -15.18
Covariance contribution 0.40
Combinations/Pair 1.17
Mean z-score -1.45
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.578822
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14659185 112 - 20766785
CAAGGAGUUGCCACAGUAAAUGGUCCAUCUUAGAGACGUUUGACUGUAAUUCAUUUUAAAGCUGAUAAAAUGGAAAUGGGGCAAGCAAAAAU---AAAACAAAAACAACUACAAA
.......(((((((((((((((.(((......).))))))).)))))..(((((((((.......))))))))).....)))))........---.................... ( -19.90)
>DroSec_CAF1 13792 112 - 1
CAAGGAGUUGCCACAGUAAAUUUUCCAUCUUAGAGACGCUUGACUGUAAUUCAUUUUAAAGCUGAUAAAAUGGAAAUGGAGCAAGCAAAAAU---AAAACAAAAACAACUACAAA
...(.(((((...........((((.......)))).(((((.((.((.(((((((((.......)))))))))..)).)))))))......---..........))))).)... ( -18.10)
>DroSim_CAF1 13804 112 - 1
CAAGGAGUUGCCACAGUAAAUUGUCCAUCUUAUAGACGCUUGACUGUAAUUCAUUUUAAAGCUGAUAAAAUGGAAAUGGGGCAAGCAAAAAU---AAAACAAAAACAACUACAAA
.......((((((((((.((.((((.........)))).)).)))))..(((((((((.......))))))))).....)))))........---.................... ( -19.50)
>DroEre_CAF1 13963 111 - 1
CAAGGACUUGCUACAGUAAAUUAUCCAUCUU-CAGACGUUCGACUGUAAUUCACUUUAAAGCUGAUAAAAUGGAAAUGGGGCAAGCAAAAAA---AAAACAAAAACAACUACAAA
....(.(((((..((........(((((..(-(((...((.((.((.....)).)).))..))))....)))))..))..))))))......---.................... ( -15.50)
>DroYak_CAF1 13915 115 - 1
AAGGGUCUUGCUACAGUAAAUUAUUCAUCUUACGGAUGUUUGACUGUAAUUCAUUUUAAAGCUGAUAAAAUGGAAAUGGAGCAAGCAAAAAAAUAAAAACAAAAACAACUACAAA
....(.(((((((((((....(((((.......)))))....)))))..(((((((((.......))))))))).....)))))))............................. ( -20.50)
>consensus
CAAGGAGUUGCCACAGUAAAUUAUCCAUCUUACAGACGUUUGACUGUAAUUCAUUUUAAAGCUGAUAAAAUGGAAAUGGGGCAAGCAAAAAU___AAAACAAAAACAACUACAAA
.......((((((((((....((((.........))))....)))))..(((((((((.......))))))))).....)))))............................... (-14.78 = -15.18 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:06 2006