Locus 4453

Sequence ID 2R_DroMel_CAF1
Location 14,644,384 – 14,644,481
Length 97
Max. P 0.761225
window7114

overview

Window 4

Location 14,644,384 – 14,644,481
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 84.64
Mean single sequence MFE -35.58
Consensus MFE -26.02
Energy contribution -25.34
Covariance contribution -0.68
Combinations/Pair 1.25
Mean z-score -1.89
Structure conservation index 0.73
SVM decision value 0.50
SVM RNA-class probability 0.761225
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14644384 97 + 20766785
UGGCGGGCUAACCGAUGCCUUUGAUAAUUAUCGAUGCACCGAUUACACGCAUACUCCAAGUGGUGGUUGUGCAGCCCUGCAUCGCGUUGCCAACGAA
..(..(((.(((((((((..(((((....)))))(((((.((((((.(((.........)))))))))))))).....)))))).))))))..)... ( -31.90)
>DroSec_CAF1 7192 97 + 1
UGGCGGGCUAACCGUUGCGUCCGAUAAGUAUCGAUGUACCGAUUACACGCAUACCCCAAGUGGUGGUUGUGCAGCCCUGCAUCGCGUUGCCAACCAA
(((((((((...((.((((((.(((....))))))))).)).......(((((((((....)).)).)))))))))).((...))...))))..... ( -34.10)
>DroSim_CAF1 9733 97 + 1
UGGCGGGCUAACGGAUGCGUUCGAUUAGUAUCGAUGUACCGAUCACACGCAUACUCCAAGUGGUGGUUGUGCAUCCCUGCAUCGCGUUGCCAACCAA
(((..(((.(((((((((....(((....)))(((((((.((((((.(((.........))))))))))))))))...))))).)))))))..))). ( -40.20)
>DroEre_CAF1 7209 88 + 1
UGGCGGGCUGA---------CCGAUAAAUAUCGAUGCGCCGAUUACACGCGUAAUCCAAGUGGUGGUUGUGCAGCCCUGCAGCGCGUUGCCAACUAA
((((((.....---------))..........(((((((.((((((....))))))...(..(.((((....)))))..).)))))))))))..... ( -31.20)
>DroYak_CAF1 7650 97 + 1
UGGCGGCCUGAGCGCUGCGGCCGAUAAAUAUCGAUGCGCCGAUUGCAUGCGUACUCCAAGCGGUGGCUGUGCAGCCCUGCAGCGCGUUGCCAACUAA
(((((((....((((((((((((((....)))).((((((.(((((.((.(....))).))))).)..))))))))..))))))))))))))..... ( -40.50)
>consensus
UGGCGGGCUAACCGAUGCGUCCGAUAAAUAUCGAUGCACCGAUUACACGCAUACUCCAAGUGGUGGUUGUGCAGCCCUGCAUCGCGUUGCCAACCAA
(((((((((............((((....))))..((((.((((((.(((.........)))))))))))))))))).((...))...))))..... (-26.02 = -25.34 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:58 2006