Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,639,868 – 14,639,969 |
Length | 101 |
Max. P | 0.955596 |
Location | 14,639,868 – 14,639,969 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -20.96 |
Consensus MFE | -16.65 |
Energy contribution | -17.53 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -2.16 |
Structure conservation index | 0.79 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14639868 101 - 20766785 GUGCACAUAUCUCUAUAUAAUCGCGUUUUUCUUCAUAUCAGGAAAUUGAAAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCAAC ((((..((((....)))).(((((((((((((((.......)))...))))))))))))..)))).......((((((((.....))).)))))....... ( -25.30) >DroSec_CAF1 2635 101 - 1 ACGCACAUAUCUCUAUAUAAUCGCGUUUUUCCUCAUAUCAGGAAAUUGAAAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCACC ..((((.............((((((((((((.((.......))....)))))))))))).(((((...((..........))...)))))))))....... ( -21.90) >DroSim_CAF1 2504 101 - 1 ACGCACAUAUCUCUAUAUAAUCGCGUUUUUCCUCAUAUCAGGAAAUUGAAAUAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCACC ..((((..............(((....((((((......)))))).)))....(((((((........)))))))..........))))((((....)))) ( -21.40) >DroEre_CAF1 2605 101 - 1 ACGCACAUACCUCCAAACAAUCGAGUUUUUCUUUAUAUCAAGAAAUGGAAAAAAGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGCUGUAAUCACC .(((((.....(((((((......)))((((((......)))))))))).....((((((........))))))...........)))))........... ( -19.20) >DroYak_CAF1 2538 101 - 1 ACGCACAUAACUCUAUGCAAUCGAGUUUUUUCCCAUAUCAGUAAAUUGAGAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGCUGUAAUCACC .(((((..(((((.........))))).((((.((...........)).))))(((((((........)))))))..........)))))........... ( -17.00) >consensus ACGCACAUAUCUCUAUAUAAUCGCGUUUUUCCUCAUAUCAGGAAAUUGAAAAAUGUGAUACGCACAAUUAUCACACCCAUUAUCGGUGCGGUGUAAUCACC ..((((.............((((((((((((................)))))))))))).(((((...((..........))...)))))))))....... (-16.65 = -17.53 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:57 2006