Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,632,070 – 14,632,174 |
Length | 104 |
Max. P | 0.665178 |
Location | 14,632,070 – 14,632,174 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -18.47 |
Consensus MFE | -16.16 |
Energy contribution | -16.27 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.86 |
Structure conservation index | 0.87 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14632070 104 - 20766785 UAAACAUUCCGAAAACGAUUUAGAUUUAAGUU-AAUAUUUCCGAACGAUUUAGAUUUAAGUCAACAUUUAAGAAAUGCUUUCGUGUUUGUAUUUAUACGUUUCAC ...(((..((((((..((((((((((((((((-.............))))))))))))))))..((((.....)))).))))).)..)))............... ( -18.92) >DroSec_CAF1 271041 98 - 1 AAAACAUUCCGAAAACAAUUUAGAUUUAAGUUUAAU-------AACGAUUUAGAUUUAAGUCAACAUUUCGAAAAUGCUUUCGUGUUUGUAUUUAUACGUUUCAC ...(((..((((((........(((((((((((((.-------......)))))))))))))..((((.....)))).))))).)..)))............... ( -17.10) >DroSim_CAF1 268001 98 - 1 AAAACAUUCCGAAAACAAUUUAGACUUAAGUUUAAU-------AACGAUUUAGAUUUAAGUCAACAUUUCGAAAAUGCUUUCGUGUUUGUAUUUAUACGCUUCAC ...(((..((((((........(((((((((((((.-------......)))))))))))))..((((.....)))).))))).)..)))............... ( -19.40) >consensus AAAACAUUCCGAAAACAAUUUAGAUUUAAGUUUAAU_______AACGAUUUAGAUUUAAGUCAACAUUUCGAAAAUGCUUUCGUGUUUGUAUUUAUACGUUUCAC ...(((..((((((........(((((((((((((..............)))))))))))))..((((.....)))).))))).)..)))............... (-16.16 = -16.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:53 2006