Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,563,468 – 2,563,564 |
Length | 96 |
Max. P | 0.992742 |
Location | 2,563,468 – 2,563,564 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 75.89 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -14.25 |
Energy contribution | -14.45 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.81 |
Structure conservation index | 0.60 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2563468 96 + 20766785 --AUUAACCGACUUUC-UUUCAGUUAAUCUGCUUCGCCUUGGCCGUGUUUCUGGCCAUUAGUUUUAAGAACAAGCAGCGACGGAUGGAGUUCUAGUUCU --.......((..(((-(.((.(((...((((((.....((((((......))))))...((((...)))))))))).))).)).)))).))....... ( -21.30) >DroPse_CAF1 620 89 + 1 CUUUUA----AUUUCCUUUGCAGUUGCUCUGCUUCGUCCUGGCCGUCUUUCUAGCCAUUAGCUUCCGCAACAAGCAGCGCCGCCUGCAGUU------CU ......----.......((((((..((.((((((.((..((((..........))))...((....)).)))))))).))...))))))..------.. ( -22.70) >DroEre_CAF1 733 92 + 1 UUAUUACCCGACUUCC-UUUCAGUUGAUCUGCUGUGCCUUGGCCGUUUUUCUGGCCAUUAGCUUUAAGAACAAGCAGCGGCGGAUGGAGUU------CU ......(((((((...-....)))))(((((((((....((((((......))))))...((((.......)))).)))))))))))....------.. ( -27.80) >DroWil_CAF1 1529 89 + 1 AAUUUA----AUUCAUUUUCCAGCUGAUUUGCUGUGCCUUGGCCGUAUUUUUGGCCAUCAGUUUUCGCAAUAAGCAACGGCGGAUGCAAUU------UU ......----........(((.((((..(((((.(((..((((((......))))))...(....))))...)))))))))))).......------.. ( -24.10) >DroYak_CAF1 859 92 + 1 UUAUUAUCCGACUUCU-UUUCAGUUAAUCUGCUUCGCCUUGGCCGUAUUUCUGGCCAUUAGUUUUAAGAACAAGCAGCGGCGGAUGGAGUU------CU .........((((((.-...(((.....))).((((((.((((((......))))))...((((...)))).......)))))).))))))------.. ( -23.30) >DroPer_CAF1 620 89 + 1 CUUUUA----AUUUCCUUUGCAGUUGCUCUGCUUCGUCCUGGCCGUCUUUCUAGCCAUUAGCUUCCGCAACAAGCAGCGCCGCCUGCAGUU------CU ......----.......((((((..((.((((((.((..((((..........))))...((....)).)))))))).))...))))))..------.. ( -22.70) >consensus CUAUUA____ACUUCC_UUUCAGUUGAUCUGCUUCGCCUUGGCCGUAUUUCUGGCCAUUAGCUUUAACAACAAGCAGCGGCGGAUGCAGUU______CU .................(((((.(((..((((((.((..((((((......))))))...)).........))))))...))).))))).......... (-14.25 = -14.45 + 0.20)
Location | 2,563,468 – 2,563,564 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.89 |
Mean single sequence MFE | -26.35 |
Consensus MFE | -13.80 |
Energy contribution | -13.55 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -2.81 |
Structure conservation index | 0.52 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2563468 96 - 20766785 AGAACUAGAACUCCAUCCGUCGCUGCUUGUUCUUAAAACUAAUGGCCAGAAACACGGCCAAGGCGAAGCAGAUUAACUGAAA-GAAAGUCGGUUAAU-- ......................(((((((((.....)))...(((((........))))).....))))))(((((((((..-.....)))))))))-- ( -22.00) >DroPse_CAF1 620 89 - 1 AG------AACUGCAGGCGGCGCUGCUUGUUGCGGAAGCUAAUGGCUAGAAAGACGGCCAGGACGAAGCAGAGCAACUGCAAAGGAAAU----UAAAAG ..------...(((((...((.(((((((((((....))...(((((........))))).))).)))))).))..)))))........----...... ( -32.30) >DroEre_CAF1 733 92 - 1 AG------AACUCCAUCCGCCGCUGCUUGUUCUUAAAGCUAAUGGCCAGAAAAACGGCCAAGGCACAGCAGAUCAACUGAAA-GGAAGUCGGGUAAUAA .(------(..(((....(((...((((.......))))...(((((........))))).))).(((........)))...-)))..))......... ( -24.90) >DroWil_CAF1 1529 89 - 1 AA------AAUUGCAUCCGCCGUUGCUUAUUGCGAAAACUGAUGGCCAAAAAUACGGCCAAGGCACAGCAAAUCAGCUGGAAAAUGAAU----UAAAUU ..------((((.(((..(((.((((.....)))).......(((((........))))).))).((((......))))....))))))----)..... ( -23.60) >DroYak_CAF1 859 92 - 1 AG------AACUCCAUCCGCCGCUGCUUGUUCUUAAAACUAAUGGCCAGAAAUACGGCCAAGGCGAAGCAGAUUAACUGAAA-AGAAGUCGGAUAAUAA ..------......(((((.(.(((((((((.....)))...(((((........))))).....)))))).....((....-))..).)))))..... ( -23.00) >DroPer_CAF1 620 89 - 1 AG------AACUGCAGGCGGCGCUGCUUGUUGCGGAAGCUAAUGGCUAGAAAGACGGCCAGGACGAAGCAGAGCAACUGCAAAGGAAAU----UAAAAG ..------...(((((...((.(((((((((((....))...(((((........))))).))).)))))).))..)))))........----...... ( -32.30) >consensus AG______AACUCCAUCCGCCGCUGCUUGUUCCGAAAACUAAUGGCCAGAAAGACGGCCAAGGCGAAGCAGAUCAACUGAAA_GGAAAU____UAAAAA ......................(((((((((.....)))...(((((........))))).....))))))............................ (-13.80 = -13.55 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:44 2006