Locus 4449

Sequence ID 2R_DroMel_CAF1
Location 14,629,540 – 14,629,634
Length 94
Max. P 0.982202
window7108

overview

Window 8

Location 14,629,540 – 14,629,634
Length 94
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 77.98
Mean single sequence MFE -26.84
Consensus MFE -13.64
Energy contribution -15.19
Covariance contribution 1.56
Combinations/Pair 1.06
Mean z-score -2.94
Structure conservation index 0.51
SVM decision value 1.91
SVM RNA-class probability 0.982202
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14629540 94 + 20766785
------------GGG-----CCAUCCCAUCUUGGGCCGCCAUUCCCAGCCAUUU--UUUCACUCGGCUAAUGUCUCAUUAGCCCAGCAGCUGCCGUCGCAGCAAUAUGCACUU
------------.((-----(...(((.....)))..))).......((.....--.....((.((((((((...)))))))).))..(((((....))))).....)).... ( -29.00)
>DroSec_CAF1 268516 85 + 1
------------GGG-----CCAUCCCAUCUUGGCCCGCCAUUCCCAGCCAUUU-UUUUCAGUCG-------UCUCAUUAGCCCA---GCUGCCAUCGCAGCAAUAUGCACUU
------------(((-----(((........)))))).................-..........-------........((...---(((((....))))).....)).... ( -20.90)
>DroSim_CAF1 265434 92 + 1
------------GGG-----CCAUCCCAUCUUGGCCCGCCAUUCCCAGCCAUUU-UUUUCACUCGGCUAAUGUCUCAUUAGCCCA---GCUGCCAUCGCAGCAAUAUGCACUU
------------(((-----(((........))))))((...............-.........((((((((...))))))))..---(((((....))))).....)).... ( -32.00)
>DroEre_CAF1 271111 92 + 1
------------GGG-----CCAUUCCAACCUGGGCCGCCAUUCCCAGCCCUCU-UUUUCACCCAGCUAAUGUCUCAUUAGCCCA---GCUGCCGUCGCAGCAAUAUGCACUU
------------(((-----..........(((((........)))))......-......))).(((((((...)))))))...---(((((....)))))........... ( -24.05)
>DroYak_CAF1 278199 98 + 1
------------GGGAUGGCCCAUCCCAUAGUGGGCCACCAUUCCCAGCCUUUUUUUUUCACCCGGCUAAUGUCUCAUUAGCCCA---GCUGGCGUCGCAGCAAUAUGCACUU
------------((((((((((((......))))))))....)))).((...............((((((((...))))))))..---((((......)))).....)).... ( -36.40)
>DroAna_CAF1 310411 97 + 1
GUGUUGUUUUCAGGG-----CCAUUCUC---CAGCAUCCCGUUCCC----CUUU-CUUUUUCCCGGCUAAUGUCUCAUUAGGCCA---GCUGGCAUCGCAGCAAUAUGCACUU
((((((((.....((-----((......---.(((.....)))...----....-.........(((....)))......)))).---((((......)))))))).)))).. ( -18.70)
>consensus
____________GGG_____CCAUCCCAUCUUGGCCCGCCAUUCCCAGCCAUUU_UUUUCACCCGGCUAAUGUCUCAUUAGCCCA___GCUGCCAUCGCAGCAAUAUGCACUU
............(((..........((.....)).........)))..................((((((((...)))))))).....(((((....)))))........... (-13.64 = -15.19 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:52 2006