| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,611,223 – 14,611,334 |
| Length | 111 |
| Max. P | 0.752217 |
| Location | 14,611,223 – 14,611,334 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -24.64 |
| Energy contribution | -25.08 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14611223 111 + 20766785 UACUUUU-UUUCUUCUCUCUCUCUCUCU-CUGUGCCCACAGAUCAGCCAAGGCUGGAUACUUGGUCCGGAAUUGUGCGAUAUCUGGACGUCGUGCGAUGUCCUCUGCUGCACU .......-....................-..((((...((((...(((((..((((((.....))))))..))).)).......(((((((....)))))))))))..)))). ( -33.40) >DroSec_CAF1 243184 110 + 1 UACUUUU-UUUUCU-UCUCUCUCUCUCU-CUGUGCCCACAGAUCAGCCAAGGCUGGAUACUCGGUCCGGAAUUGUGCGAUAUAUGGACGUCGUGCGAUGUCCUCUGCUGCACU .......-......-.............-..((((...((((...(((((..((((((.....))))))..))).)).......(((((((....)))))))))))..)))). ( -33.40) >DroSim_CAF1 246682 102 + 1 UACUUUU-UUUCCU-UCU--------CU-CUGUGCCCACAGAUCAGCCAAGGCUGGAUACUUGGUCCGGAAUUGUGCGAUAUAUGGACGUCGUGCGAUGUCCUCUGCUGCACU .......-......-...--------..-..((((...((((...(((((..((((((.....))))))..))).)).......(((((((....)))))))))))..)))). ( -33.40) >DroEre_CAF1 251054 98 + 1 ----UAUUUUUGCU-U----------CUUUUGUGCCCACAGAUUAGCCAGGGUUGGAUACUUGGUCCGGAGUUGUGCGAUAUCUGGACUUCGUGCGAUGUCCUAUGCUGCACA ----.......(((-(----------(.(((((....)))))...((((((........))))))..)))))((((((.(((..((((.((....)).)))).))).)))))) ( -28.30) >DroYak_CAF1 259316 101 + 1 CAUUCAUUUUUCCU-U----------CU-UUGUGACCACAGAUCAGCCAGGGCUGGAUACUUGGUCCGGAAUUGUGCGAUAUCUGGACUUCGUGCGAUGUCCUCUGCUGCACA ..............-.----------.(-(((.(((((.((((((((....))).))).)))))))))))..((((((.((...((((.((....)).))))..)).)))))) ( -29.00) >DroAna_CAF1 287517 104 + 1 CCCUCUU-UUUUCC-AC------AUUUU-UAAUGCCCACAGAUCAGCCAAGGUUGGAUACUUGGGCCGGAACUGUGCGAUAUUUGGACCUCCUGCGACGUCCUCUGCUGCACG .......-..((((-..------((...-..))(((((.((((((((....))).))).))))))).))))..(((((.((...((((.((....)).))))..)).))))). ( -25.70) >consensus UACUUUU_UUUCCU_UC_________CU_CUGUGCCCACAGAUCAGCCAAGGCUGGAUACUUGGUCCGGAAUUGUGCGAUAUCUGGACGUCGUGCGAUGUCCUCUGCUGCACU ...............................((((...((((...(((((..((((((.....))))))..))).)).......((((.((....)).))))))))..)))). (-24.64 = -25.08 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:46 2006