Locus 4442

Sequence ID 2R_DroMel_CAF1
Location 14,603,138 – 14,603,233
Length 95
Max. P 0.551524
window7099

overview

Window 9

Location 14,603,138 – 14,603,233
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 93.07
Mean single sequence MFE -26.26
Consensus MFE -19.10
Energy contribution -19.18
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -2.06
Structure conservation index 0.73
SVM decision value 0.04
SVM RNA-class probability 0.551524
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14603138 95 + 20766785
UAACGAAAGUGGCUGCUAAUGAAGCCGGGUUGGAAAGAGGAUUAGGUGGAAAACUUGCCAUUUGAGAGCGAGAAUAGCAGGAGAGCAGCAGCGUU
..((....)).((((((.......((..((((.........((((((((........)))))))).........)))).)).....))))))... ( -24.37)
>DroSec_CAF1 235108 93 + 1
UAACACAAGUGGCUGCUAAUGAAGCCAGGUUGGAAAGAGCAUUAGGUGGAAAACUUGCCAUUUGAGAGCGAGAAUAGCAGG--AGCAGCAGCGUG
...(((..((.((((((..((...((.....)).....((.((((((((........))))))))..))........))..--)))))).))))) ( -25.00)
>DroSim_CAF1 238627 93 + 1
UAACGCAAGUGGCUGCUAAUGAAGCCAGGUUGGAAAGAGCAUUAGGUGGAAAACUUGCCAUUUGAGAGCGAGAAUAGUAGG--AGCAGCAUCAUG
..((....)).((((((..((...((.....)).....((.((((((((........))))))))..))........))..--))))))...... ( -23.70)
>DroEre_CAF1 243088 92 + 1
UAACGCAAGUGGCUGCUAAUGAAGCCGG-UUGGAAAGAGCAUUAGGUGGAAAACUUGCCAUUCGAGAGCGGGAAUAGCAGG--AGCAGCAGCGUG
..((((.....((((((......(((.(-((......)))....)))......(((((.((((........)))).)))))--)))))).)))). ( -27.40)
>DroYak_CAF1 251227 93 + 1
UAACGCAAGUGGCUGCUAAUGAAGCCGGCUUGGAAAGAGCAUUAGGUGGAAAACUUGCCAUUUGCGAGCGAGAAUAGCUGG--AGCAGCAGCGUG
...((((((((((..........(((.((((.....))))....))).........))))))))))..........((((.--.....))))... ( -30.81)
>consensus
UAACGCAAGUGGCUGCUAAUGAAGCCGGGUUGGAAAGAGCAUUAGGUGGAAAACUUGCCAUUUGAGAGCGAGAAUAGCAGG__AGCAGCAGCGUG
..((....)).((((((((((...((.....))......))))).........(((((.((((........)))).)))))...)))))...... (-19.10 = -19.18 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:43 2006