Locus 4441

Sequence ID 2R_DroMel_CAF1
Location 14,602,976 – 14,603,073
Length 97
Max. P 0.597314
window7098

overview

Window 8

Location 14,602,976 – 14,603,073
Length 97
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 90.29
Mean single sequence MFE -26.20
Consensus MFE -22.48
Energy contribution -22.72
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.30
Structure conservation index 0.86
SVM decision value 0.13
SVM RNA-class probability 0.597314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14602976 97 + 20766785
CAUAAACCCGAGGCUGUUGCGUAAUGGUGGGGCCUCUCUACUGGUCUCCAUCUCAAAGGAAUUCGAGUAGAAUCUCAAAGCUUUGCUUCUAUUU-----------UUU
.........(((((....((.....(((((((((........)))).))))).....(..((((.....))))..)...))...))))).....-----------... ( -26.10)
>DroSec_CAF1 234945 98 + 1
CAUAAACCCCAGGCAGUUGCGUAAUGGUGGGGCCUCUCUACUGGUCUCCAUCUCAAAGGAAUUCGAGGAGAAUCUCUUAGCUUUGCUUCUAUUU----------UUUU
..........((((((..((.....(((((((((........)))).)))))...(((..((((.....))))..))).)).))))))......----------.... ( -25.70)
>DroSim_CAF1 238464 98 + 1
CAUAAACCCCAGGCAGUUGCGUAAUGGUGGGGCCUCUCUACUGGUCUCCAUCUCAAAGGAAUUCGAGGAGAAUCUCUUAGCUUUGCUUCUAUUU----------UUUU
..........((((((..((.....(((((((((........)))).)))))...(((..((((.....))))..))).)).))))))......----------.... ( -25.70)
>DroEre_CAF1 242925 98 + 1
CAGAAACCCCAGGCAGUUGCGUAAUGGCGGGGCCUCUUUACUGGUCCCCAUCUCAAAGGAAUUCGAGGAGAAUCUCGUUGCUUUGCUUCUAUUU----------UUUU
..........((((((....(((((((.((((((........))))))..((((...(.....)...))))...))))))).))))))......----------.... ( -24.30)
>DroYak_CAF1 251054 108 + 1
CAGAAACCCCAGGCAGUUGCGUAAUGGUGGGGCCUCUUUACUGGUCUCCAUCUCAAAGGAAUUCGAGGAGAAUCUCCUUGCUUUGCUUCCAUUUUUCUUCUUUUUUUU
.(((((....((((((..((.....(((((((((........)))).)))))...(((((((((.....)))).))))))).)))))).....))))).......... ( -29.20)
>consensus
CAUAAACCCCAGGCAGUUGCGUAAUGGUGGGGCCUCUCUACUGGUCUCCAUCUCAAAGGAAUUCGAGGAGAAUCUCUUAGCUUUGCUUCUAUUU__________UUUU
..........((((((..((.....(((((((((........)).))))))).....(..((((.....))))..)...)).)))))).................... (-22.48 = -22.72 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:42 2006