Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,560,706 – 2,560,826 |
Length | 120 |
Max. P | 0.831634 |
Location | 2,560,706 – 2,560,826 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -24.92 |
Energy contribution | -25.55 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.21 |
Mean z-score | -2.05 |
Structure conservation index | 0.73 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2560706 120 + 20766785 AACUUCGUGUUUAGAGCCACCUCUCUAAACAUUUUACUGAAGUUGAGCGAUAGUUUUUUUCAGUGAUGUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAACGAAUUGCGCA ...(((((....((((((....(((((((((((..(((((((..((((....)))).)))))))))))))(((.((..(......)..))))))))))))))))....)))))....... ( -38.90) >DroSec_CAF1 39174 119 + 1 CACUUCGUUUUUGGGUUAACCUA-AAAACCACUUUACUGAAGUUGAACGAUCGUUUUGUUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAAUUGCGCA ......(((((((((....))))-)))))....((((((((...((((....))))..))))))))(((.(((.((..(......)..))))).)))(.((..(((....)))..)).). ( -34.50) >DroSim_CAF1 36032 119 + 1 CACUUCGUUUUUAGGUUAACCUA-AAAACCACUUUACUGAAGUUGAACGAUCGUUUUGUUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAAUUGCGCA ......(((((((((....))))-)))))....((((((((...((((....))))..))))))))(((.(((.((..(......)..))))).)))(.((..(((....)))..)).). ( -34.80) >DroEre_CAF1 34040 119 + 1 CACGUCGUGUUUAGAGUCACCUCUCUAAAAACUUUAC-GAAAUUAAAUGAUCGUUUCGCUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAGUUGCGCA (((...((.(((((((......))))))).))....(-(((((.........))))))....))).(((.(((.((..(......)..))))).)))(.((..(((....)))..)).). ( -27.60) >consensus CACUUCGUGUUUAGAGUAACCUA_AAAAACACUUUACUGAAGUUGAACGAUCGUUUUGUUCAGUGAUCUUGUGCGUUGGAGAAAACUGACCACUAGAGGGCUCUUCAAAUGAAUUGCGCA ....((((((..(((((..((((..........((((((((...((((....))))..))))))))....(((.((..(......)..)))))..)))))))))..))))))........ (-24.92 = -25.55 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006