Locus 4438

Sequence ID 2R_DroMel_CAF1
Location 14,588,163 – 14,588,270
Length 107
Max. P 0.927953
window7092

overview

Window 2

Location 14,588,163 – 14,588,270
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.56
Mean single sequence MFE -31.08
Consensus MFE -20.25
Energy contribution -19.42
Covariance contribution -0.83
Combinations/Pair 1.23
Mean z-score -3.09
Structure conservation index 0.65
SVM decision value 1.19
SVM RNA-class probability 0.927953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14588163 107 - 20766785
AA-AAUCGGAGUCAAAGCCAGAAGGCGAGGAAAAUAAGGCAAAAGAAUGGGCGUUGCGGAUUGGAAAAUUUAAUUUGCAACGGCCGAAGAACUUUCUCCACCGACGGG
..-..((((..((...(((....)))...))......((..((((..(((.((((((((((((((...)))))))))))))).))).....))))..)).)))).... ( -33.90)
>DroPse_CAF1 215393 104 - 1
AG-AGUUAGAGUCAAAGUCAAAG---CAGAAGCAGAAGCUGCAAGAAUGGGCGUUGCGGAUUGGAAAAUUUAAUUUGCAACGGCCGAGGAAGUUUCUACAGCAACGAG
..-.(((...............(---(....))(((((((.(.....(((.((((((((((((((...)))))))))))))).)))..).)))))))..)))...... ( -28.40)
>DroSec_CAF1 220371 107 - 1
AA-AAUCGGAGUCAAAGCCAGAAGGCGAGAAAAAUAAGGCAAAAGAAUGGGCGUUGCGGAUUGGAAAAUUUAAUUUGCAACGGCCGAAGAACUUUCUCCACCGACGGG
..-..((((.......(((....)))((((((.......(....)..(((.((((((((((((((...)))))))))))))).)))......))))))..)))).... ( -32.90)
>DroYak_CAF1 234944 108 - 1
AAAAAUCGGAGUCAAAGCCAGAAGGCGAGGAAAAUAAGGCCAAAGAAUGGGCGUUGCGGAUUGGAAAAUUUAAUUUGCAACGGCCGAGAAACUUUCUCCACCAACGGG
.......((((((...(((....)))...))................(((.((((((((((((((...)))))))))))))).))).........))))......... ( -31.80)
>DroAna_CAF1 260074 101 - 1
AAAACCCGGAG-------CAGAAGCCGAAGAAAAUAUGGCUCAAGAAUGGGCGUUGCGAAUUGGAAAAUUUAAUUUGCAAUGGCCGAAGAAGUUUCCCCAGAAACGGG
....(((....-------..((.((((.(.....).)))))).....(((.((((((((((((((...)))))))))))))).))).....(((((....)))))))) ( -31.10)
>DroPer_CAF1 217782 104 - 1
AG-AGUUAGAGUCAAAGUCAAAG---CAGAAGCAGAAGCUGCAAGAAUGGGCGUUGCGGAUUGGAAAAUUUAAUUUGCAACGGCCGAGGAAGUUUCUACAGCAACGAG
..-.(((...............(---(....))(((((((.(.....(((.((((((((((((((...)))))))))))))).)))..).)))))))..)))...... ( -28.40)
>consensus
AA_AAUCGGAGUCAAAGCCAGAAGGCGAGAAAAAUAAGGCAAAAGAAUGGGCGUUGCGGAUUGGAAAAUUUAAUUUGCAACGGCCGAAGAACUUUCUCCACCAACGGG
.................((.............................((.((((((((((((((...)))))))))))))).))((((...)))).........)). (-20.25 = -19.42 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:37 2006