Locus 4437

Sequence ID 2R_DroMel_CAF1
Location 14,587,053 – 14,587,146
Length 93
Max. P 0.703187
window7091

overview

Window 1

Location 14,587,053 – 14,587,146
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 83.75
Mean single sequence MFE -23.08
Consensus MFE -19.50
Energy contribution -19.38
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -1.63
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.703187
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14587053 93 + 20766785
AUCGAUGGUCCUGCUGCUGUUCCUGCAGCAAAUAGUGCUAGCUAGUGCACUGAAAGAAAAAUAUUUACGGAAUUACAUUUCGAGAAAAAGUAG
.((((((.(((((((((.......))))))..((((((........))))))................)))....))..)))).......... ( -24.30)
>DroSec_CAF1 219323 92 + 1
AUCGAUGGUCCUGCUGCUGUUCCUGCAGCAAAUAGUGCUAGCAAAUGCACUGGGAGAAAAACAUCUAGCGAAUUACAUUUCGAGAA-AAGUAU
.((((((.(((((((((.......))))))..((((((........)))))))))......))))...((((......)))).)).-...... ( -25.50)
>DroSim_CAF1 222433 92 + 1
AUCGAUGGUCCUGCUGCUGUUCCUGCAGCAAAUAGUGCUAGCAAAUGCACUAAGAGAAAAACUUUUACCAAAUUACAUUUCGAGAA-AAGUAU
.((((((((..((((((.......))))))..((((((........))))))..............)))).........))))...-...... ( -22.50)
>DroEre_CAF1 226540 90 + 1
AUCGAUGGUCCUGCUGCUGUUCCUGCAGCAAAUAGUGCCAGCCAGUGCACUGAAAAA--AAGAUAAGCCAACUAAGGUUUCGAGAA-AAGUAC
.((((..(((.((((((.......))))))..(((((((.....).)))))).....--..))).((((......))))))))...-...... ( -23.10)
>DroYak_CAF1 233827 91 + 1
AUCGAUGGUCCUGCUGCUGUUCCUGCGGCAAAUAGUGCCAGCAAGUGCACUGAAAAA-AAACAUUUACCAAUUAGGGUUUAGAAAA-GAGUGC
.((...(..((((((((.......)))))...(((((((.....).)))))).....-...............)))..)..))...-...... ( -20.00)
>consensus
AUCGAUGGUCCUGCUGCUGUUCCUGCAGCAAAUAGUGCUAGCAAGUGCACUGAAAGAAAAACAUUUACCAAAUUACAUUUCGAGAA_AAGUAC
.((((......((((((.......))))))..((((((........))))))...........................)))).......... (-19.50 = -19.38 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:36 2006