Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,574,297 – 14,574,394 |
Length | 97 |
Max. P | 0.660008 |
Location | 14,574,297 – 14,574,394 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.91 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -15.38 |
Energy contribution | -16.63 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.70 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14574297 97 - 20766785 UAUU---GUAGAUUUUUUU--CCACCAGAAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGGGUUCUAGGUGUGCUCGGCACAAAGUUUGUACUGA ....---............--.........((((.((((...((((((((((((......))))))))))))....(((((...)))))....)))))))). ( -22.00) >DroSec_CAF1 206703 97 - 1 UAUU---GGAGAUUUUUUU--UCACCAGCAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGAGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ..((---((.((.......--)).))))..((((.((((...((((((((((((......))))))))))))...((((.....)))).....)))))))). ( -25.00) >DroSim_CAF1 208139 97 - 1 UAUU---GUAGAUUUUUUU--UCACCAGCAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGAGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ....---(((.(..((((.--...(.((((((.(((......((((((((((((......))))))))))))))).)))))).)....))))..).)))... ( -22.90) >DroEre_CAF1 213476 96 - 1 UUUC---GGAGAUUUUUU---GCACCGAAAUAGUUACAAUUUGAACUUACUUUAUUUUAUUGGAGUGGGUUCUAGGUGUGCUCGACGCAAAGUUUGUACUGA ..((---(((.(..((((---((..(((....((.(((....((((((((((((......))))))))))))....))))))))..))))))..).).)))) ( -26.20) >DroYak_CAF1 220614 99 - 1 UAUC---GGAGAUUUUUUUUGCCACGGGAAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGGGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ..((---((..((...(((((...((((......((((....((((((((((((......))))))))))))....))))))))...)))))...)).)))) ( -22.30) >DroAna_CAF1 244286 83 - 1 UAUUUUCGGAUUUUUUAUUUUUC-----------GAUUAUUUGAACUUACUUUUUU----UGGAGGGGG----AUGUGUGCUCGGCACAAGGUUUCUAGCAG ...(((((((..........(((-----------((....))))).........))----)))))((..----((.(((((...)))))..))..))..... ( -13.61) >consensus UAUU___GGAGAUUUUUUU__UCACCAGAAUAGUUACAAUUUGAACUUACUUUAUUUGAUUGGAGUGGGUUCUAGGUGUGCUCGACACAAAGUUUGUACUGA ..............................((((.((((...((((((((((((......))))))))))))...((((.....)))).....)))))))). (-15.38 = -16.63 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:30 2006