Locus 4430

Sequence ID 2R_DroMel_CAF1
Location 14,563,032 – 14,563,123
Length 91
Max. P 0.518419
window7080

overview

Window 0

Location 14,563,032 – 14,563,123
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 87.80
Mean single sequence MFE -16.05
Consensus MFE -13.99
Energy contribution -14.23
Covariance contribution 0.24
Combinations/Pair 1.29
Mean z-score -1.33
Structure conservation index 0.87
SVM decision value -0.03
SVM RNA-class probability 0.518419
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14563032 91 - 20766785
UACUCGAAUUCAGUCGCAGUUUCAACGCCCCUCAUUAACAUACAUUUCCCUAAUUGCAGGAGGUAACUUCUUUCGGCUGAGAACUUUAUUU
........(((((((((((((..............................))))))(((((....)))))...))))))).......... ( -16.41)
>DroSec_CAF1 195436 86 - 1
UACUCGAAUUCAGCCGCAUUUCCACCGCCCCUCAUUAACAUACAUUCCCCUAAUUGCAGGAGGCAACUUCUUUCGCCUGGCAACU-----U
............((((((....................................)))(((((....))))).......)))....-----. ( -12.62)
>DroSim_CAF1 196813 91 - 1
UACUCGAAUUCAGCCGCAUUUCCACCGCCCCUCAUUAACAUACAUUCCCCUAAUUGCAGGAAGCAACUUCUUUCGGCUGGCAACUUUAUUU
.........(((((((((....................................))).(((((......)))))))))))........... ( -13.52)
>DroEre_CAF1 201695 89 - 1
UACUCGAAUCCAGCCGCAGUUCCAUU--CGCUCAUUAACAUACAUUCCCCUAAUUGCAGGAGGCAACUUCUUUCGGCUGGGAAGUUUAUUU
........(((((((((((((.....--.......................))))))(((((....)))))...))))))).......... ( -22.69)
>DroYak_CAF1 208834 90 - 1
UACUCGAAUUCUGCCGCAGUUCCAUCGCCCCUCAUUAACAUACAUUCCCCUAAUUGCAGAAGGAAACUUUUUUCGGCUGGGAACUUUAUU-
.................((((((...(((.............((..........)).(((((....)))))...)))..)))))).....- ( -15.00)
>consensus
UACUCGAAUUCAGCCGCAGUUCCACCGCCCCUCAUUAACAUACAUUCCCCUAAUUGCAGGAGGCAACUUCUUUCGGCUGGGAACUUUAUUU
.........((((((((((((..............................))))))(((((....)))))...))))))........... (-13.99 = -14.23 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:25 2006