Locus 4429

Sequence ID 2R_DroMel_CAF1
Location 14,554,793 – 14,554,883
Length 90
Max. P 0.879756
window7079

overview

Window 9

Location 14,554,793 – 14,554,883
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 77.51
Mean single sequence MFE -20.82
Consensus MFE -15.38
Energy contribution -16.22
Covariance contribution 0.84
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.74
SVM decision value 0.91
SVM RNA-class probability 0.879756
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14554793 90 + 20766785
CUGGACCUGCACAUUUCUGGCCAAAAUGCCACGAAUUGUAUGCCACGGGUCCGGCUCCACUUCCCCACACUGCCAACGGUCCCACAAAAA
..(((((((((((.(((((((......)))).))).)))..))...))))))(((................)))................ ( -23.99)
>DroSec_CAF1 187380 85 + 1
CUGGACCUGCACAUUUCUGGCCAAAAUGCCCCGAAUUGUAUGCCACGGGUCCGGCUCCUCUCGCCUC-----CUCCUCGCCCCACAAAAA
..(((((((((((.(((.(((......)))..))).)))..))...))))))(((.......)))..-----.................. ( -21.40)
>DroSim_CAF1 188663 90 + 1
CUGGACCUGCACAUUUCUGGCCAAAAUGCCCCGAAUUGUAUGCCACGGGUCCGGCUCCUCUCGCCCGCAAUUCCCACGGCCCCACAAAAA
(((((((((((((.(((.(((......)))..))).)))..))...))))))))........(((............))).......... ( -21.90)
>DroEre_CAF1 193587 71 + 1
CUGGACCUGCACAUUUCUGGCCAAAAUGCCUCGAAUUGUAUGCCAUGGGCCCUGCUGCUCA--------------C----CCCACAA-AA
.(((.(.((((.((((..(((......)))..)))))))).))))(((((......)))))--------------.----.......-.. ( -15.80)
>DroYak_CAF1 200541 76 + 1
CUGGACCUGCACAUUUCUGGCCCAAAUGCCCCGAAUUGUAUGCCAUAGGGCCUCUCCCUCC--------------CCGGGCCCACAAAAA
.(((.(.((((.((((..(((......)))..)))))))).))))..((((((........--------------..))))))....... ( -21.00)
>consensus
CUGGACCUGCACAUUUCUGGCCAAAAUGCCCCGAAUUGUAUGCCACGGGUCCGGCUCCUCU__CC_______C__CCGGCCCCACAAAAA
(((((((((((((.(((.(((......)))..))).)))..))...)))))))).................................... (-15.38 = -16.22 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:24 2006