Locus 4428

Sequence ID 2R_DroMel_CAF1
Location 14,550,278 – 14,550,382
Length 104
Max. P 0.902924
window7078

overview

Window 8

Location 14,550,278 – 14,550,382
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -25.64
Consensus MFE -21.08
Energy contribution -21.60
Covariance contribution 0.52
Combinations/Pair 1.26
Mean z-score -1.79
Structure conservation index 0.82
SVM decision value 1.03
SVM RNA-class probability 0.902924
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14550278 104 + 20766785
UGUAAAACUUAUUGCUAUCUAUUCAAGGGAAUGAUUAAUCAUUCUGUUGAUCGCCGGAGGCAACUAUAUCAUUGAUCUAAUAGCAGAAAUCCGGCUCGAUGGAG
..............(((((...((((.(((((((....))))))).))))..(((((((....)...........(((......)))..))))))..))))).. ( -29.60)
>DroSec_CAF1 182965 104 + 1
UGUAAAACUUAUGGCUAUCUAUUCAACAGAAUGAUUAAUCAUUCUGUUGAUCGCCGGAGUCAACUAUAUCAUUGAUCUCAUAGUAAAAAUCCGCCUCGAUGGAG
..............(((((...((((((((((((....))))))))))))..(.((((....(((((............))))).....)))).)..))))).. ( -26.80)
>DroSim_CAF1 184174 104 + 1
UGUAAAACUUAUGGCUAUCUAUUCGAGGGAAUGAUUAAUAAUUCUGUUGAUCGCCGGAGUCAACUAUAUCAUUGAUCUCAUAGUAGAAAUCCGGCUCGAUGGAG
..............(((((...((((.(((((........))))).))))..((((((.((.(((((............))))).))..))))))..))))).. ( -27.60)
>DroEre_CAF1 189181 104 + 1
UCUAAAACUUAUGGCUAUCUACACAAGGAAAUGAUUAAUCAUUCUGUUGAUCGCCGGAGGCAACUAUAUCAUUGAUCUCGUACCAGAAAUCCGGCUCGAUGGAA
..............(((((....(((.(.(((((....))))).).)))...(((((((....)...........(((......)))..))))))..))))).. ( -22.10)
>DroYak_CAF1 196023 104 + 1
UCUAAAACUUAUGGCUAUCUAUACAAGGAAAUGAUUAAUCAUUCCAUUGAUCGUCGGAGGCAGCUGUAUCAUUGAUCUCGUACCAGAAAUCCGACUCGAUGGAA
..............(((((....(((((((.(((....))))))).)))...((((((.....((((((..........))).)))...))))))..))))).. ( -22.10)
>consensus
UGUAAAACUUAUGGCUAUCUAUUCAAGGGAAUGAUUAAUCAUUCUGUUGAUCGCCGGAGGCAACUAUAUCAUUGAUCUCAUAGCAGAAAUCCGGCUCGAUGGAG
..............(((((....(((.(((((((....))))))).)))...((((((..(.(((((............))))).)...))))))..))))).. (-21.08 = -21.60 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:24 2006