Locus 4426

Sequence ID 2R_DroMel_CAF1
Location 14,542,579 – 14,542,687
Length 108
Max. P 0.500000
window7075

overview

Window 5

Location 14,542,579 – 14,542,687
Length 108
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.85
Mean single sequence MFE -23.38
Consensus MFE -16.18
Energy contribution -16.68
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14542579 108 + 20766785
AAGCUCCAUCAUCGCCAUCAUCAUUGUCGUUGCUUGCUUUGAUUAAGCGCGUGCAACUUGGCAAAUUGUAAUUGCCGCACUACCACCUCAUCUCA-------UCCAUCCCCUUCU
..((........................(((((.(((((.....)))))...)))))..(((((.......))))))).................-------............. ( -18.40)
>DroPse_CAF1 170338 104 + 1
CAGAGUCAACGUCGCCAUCAUCAUUGUCGUUGCUGGCUUUGAUUAAGCGCAUGCAACUUGGCAAAAUGUAAUUGCCGCUGUGGCACCCUCUCUGC-------UACACCUCC----
(((((.....((.((((.((.(......(((((((((((.....)))).)).)))))..(((((.......)))))).))))))))...))))).-------.........---- ( -30.00)
>DroEre_CAF1 181148 115 + 1
AAGCUCCAUCAGCGCCAUCAUCAUUGUCGUUGCUUGCUUUGAUUAAGCGCAUGCAAGUUGGCAAAUUGUAAUUGCCGCACUGCCACCUCAUCUCAUCCCUCAUCCAUCCCCUGCU
.(((.......((((....((((..((........))..))))...))))..(((.((((((((.......)))))).))))).............................))) ( -21.80)
>DroYak_CAF1 187791 108 + 1
AAGCUCCAUCAUCGCCAUCAUCAUUGUCGUUGCUUGCUUUGAUUAAGCGCAUGCAACUUGGCAAAUUGUAAUUGCCGCACUGCCACCUCAUCUCA-------UCCAUACCCUUCU
..((........................(((((.(((((.....)))))...)))))..(((((.......))))))).................-------............. ( -18.40)
>DroAna_CAF1 205935 104 + 1
-AGC----UCGUAGCCAUCAUCAUUGUCGUUGCUUGCUUUGAUUAAGCGCAUGCAACUUGGCAAAUUGUAAUUGCCGCAGUGCCACCUCGACUCACCUCCACUCCAUCC------
-...----(((.((.......((((((.(((((.(((((.....)))))...)))))..(((((.......)))))))))))....)))))..................------ ( -21.70)
>DroPer_CAF1 172636 104 + 1
CAGAGUCAACGUCGCCAUCAUCAUUGUCGUUGCUGGCUUUGAUUAAGCGCAUGCAACUUGGCAAAAUGUAAUUGCCGCUGUGGCACCCUCUCUGC-------UACACCUCC----
(((((.....((.((((.((.(......(((((((((((.....)))).)).)))))..(((((.......)))))).))))))))...))))).-------.........---- ( -30.00)
>consensus
AAGCUCCAUCAUCGCCAUCAUCAUUGUCGUUGCUUGCUUUGAUUAAGCGCAUGCAACUUGGCAAAUUGUAAUUGCCGCACUGCCACCUCAUCUCA_______UCCAUCCCC____
.............((.............(((((.(((((.....)))))...)))))..(((((.......)))))))..................................... (-16.18 = -16.68 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:21 2006