Locus 4425

Sequence ID 2R_DroMel_CAF1
Location 14,540,805 – 14,540,903
Length 98
Max. P 0.991092
window7074

overview

Window 4

Location 14,540,805 – 14,540,903
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.27
Mean single sequence MFE -21.51
Consensus MFE -15.77
Energy contribution -15.33
Covariance contribution -0.44
Combinations/Pair 1.25
Mean z-score -2.59
Structure conservation index 0.73
SVM decision value 2.25
SVM RNA-class probability 0.991092
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14540805 98 - 20766785
UUGCUU----UUCUUUCUUCAU--UCAAUAGAUAUUUGCCACCUGUUGCACUUUCUAUGUGCCGCUGCUGGUGAUUCUGUUUCUUUACUGGAAAAUCUACAUUA
....((----((((........--..((((((...(..(((.(.((.((((.......)))).)).).)))..).))))))........))))))......... ( -20.67)
>DroGri_CAF1 198583 96 - 1
--------CAUUUUGUCUGCAUUGUCUGCAGAUAUUUGCCACAUGUUGCACCUUCUAUGUGCCGCUACUGGUCAUUUUGUUUUUGUACUGGAAAAUCUAUUUAA
--------.....((((((((.....))))))))...((((...((.((((.......)))).))...))))......((((((......))))))........ ( -19.30)
>DroEre_CAF1 179482 86 - 1
UGGGUC-----U-------------CUUUAGAUAUUCGCCACCUGUUGCACUUUCUAUGUGCCGCUGCUGGUGAUUCUGUUUCUGUACUGGAAAAUCUACAUUA
(((((.-----.-------------...((((...((((((.(.((.((((.......)))).)).).)))))).))))(((((.....))))))))))..... ( -21.70)
>DroYak_CAF1 186063 98 - 1
UUUGUU----CCCUUUCUGCAU--CCCUUAGAUAUUUGCCACCUGUUGCACUUUCUAUGUGCCGCUGCUGGUGAUUCUGUUUCUGUACUGGAAAAUCUACAUUA
....((----((.....((((.--....((((...(..(((.(.((.((((.......)))).)).).)))..).))))....))))..))))........... ( -20.50)
>DroMoj_CAF1 278179 95 - 1
UUUCUUUCU---UUUUUUC------ACGCAGAUAUUUGCCACAUGUUGCACGUUCUAUGUGCCGCUGUUGGUGAUUUUAUUUCUGUAUUGGAAAAUCUAUUUAA
.........---.((((((------(.(((((...(..(((((.((.((((((...)))))).)))).)))..).......)))))..)))))))......... ( -22.60)
>DroAna_CAF1 194412 95 - 1
---CUU----AUUUCUCUCCAA--UUGACAGAUCUUUGCCACCUGUUGCACCUUCUACGUGCCGCUACUGGUGAUUCUGUUCCUUUAUUGGAAAAUCUAUAUAA
---...----.......(((((--(.((((((...(..(((...((.((((.......)))).))...)))..).)))))).....))))))............ ( -24.30)
>consensus
UU_CUU_____UUUUUCUCCAU__UCCACAGAUAUUUGCCACCUGUUGCACUUUCUAUGUGCCGCUGCUGGUGAUUCUGUUUCUGUACUGGAAAAUCUACAUAA
............................((((...((((((...((.((((.......)))).))...)))))).))))((((......))))........... (-15.77 = -15.33 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:20 2006