| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,540,559 – 14,540,650 |
| Length | 91 |
| Max. P | 0.937178 |
| Location | 14,540,559 – 14,540,650 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -12.96 |
| Energy contribution | -12.56 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14540559 91 - 20766785 UCCCAUGGAGAAGAGUGGAAAAAUUACUCAUACGCCCAGUGGCACAAAUAAACAUACAUGUUCCACAAGCUAGCUGCUAUUCUAUUC-----CUCU ......((((.((((((((..............(((....)))........(((....)))))))).(((.....)))..))).)))-----)... ( -19.20) >DroSec_CAF1 172943 91 - 1 UCCCAUGGAGAAGAGUGGAAAAAUUACUCAUACGCCCAGUGGCACAAAUAAACAUACAUGUUCCACAAGCUUGCUGCUAUUCUAUUC-----CAUC ....((((((.((((((((..............(((....)))........(((....)))))))).(((.....)))..))).)))-----))). ( -21.10) >DroSim_CAF1 174164 91 - 1 UCCCAUGGAGAAGAGUGGAAAAAUUACUCAUACGCCCAGUGGCACAAAUAAACAUACAUGUUCCACAAGCUUGCUGCUAUUCUAUUC-----CAUC ....((((((.((((((((..............(((....)))........(((....)))))))).(((.....)))..))).)))-----))). ( -21.10) >DroEre_CAF1 179257 70 - 1 UCCCAUGGAGAAGAGUGGAAAAAUUACUCAUACGCCCGGUGGCACAAAUAAGCU---------------------GCUAUUCCAUUC-----UGUC ....((((((..((((((.....))))))........((..((........)).---------------------.)).))))))..-----.... ( -16.00) >DroYak_CAF1 185813 91 - 1 UCCCAUGGAGUAGAGUGAAAAUAUUACUCAUACGCCCAGUGGCACAAAUAAACAUACAUGUUCCACAAGU-----UCCAUUCCAUACUAUUAUUUC ....(((((((.((((((.....)))))).........((((.(((............))).))))....-----...)))))))........... ( -19.20) >consensus UCCCAUGGAGAAGAGUGGAAAAAUUACUCAUACGCCCAGUGGCACAAAUAAACAUACAUGUUCCACAAGCU_GCUGCUAUUCUAUUC_____CAUC ....((((((..((((((.....))))))....(((....)))....................................))))))........... (-12.96 = -12.56 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:18 2006