Locus 4423

Sequence ID 2R_DroMel_CAF1
Location 14,533,817 – 14,533,932
Length 115
Max. P 0.983854
window7072

overview

Window 2

Location 14,533,817 – 14,533,932
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 94.52
Mean single sequence MFE -26.72
Consensus MFE -24.78
Energy contribution -24.22
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.62
Structure conservation index 0.93
SVM decision value 1.96
SVM RNA-class probability 0.983854
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14533817 115 - 20766785
GACUGUUGCAUUUUGGAAGCUUCGAAGCUGCCAACUGGGAACGGAGAUAAACACAGAAAAAAAAGGACAGCCCAUGGGAUUCAUUUUAAUAGGCACUUCGGAGAAUAUAAAAUAA
.........((((((....((((((((.((((..(((....)))................((((.((...((....))..)).))))....))))))))))))....)))))).. ( -28.30)
>DroSec_CAF1 166172 115 - 1
GACUGUUGCAUUUUGGAAGCUUCGAAGCUGCCAACUGGGAACGGAGAUAAACACAGAAAAAAAGAGAAAGCCCAUGGGAUUCAUUUUAAUAGGCACUUCGGAGAAUAUAAAAUAA
.........((((((....((((((((.((((..(((....))).....................(((..((....)).))).........))))))))))))....)))))).. ( -28.50)
>DroSim_CAF1 167350 115 - 1
GACUGUUGCAUUUUGGAAGCUUCGAAGCUGCCAACUGGGAACGGAGAUAAACACAGAAAAAAAGGGAGAGCCCAUGGGAUUCAUUUUAAUAGGCACUUCGGAGAAUAUAAAAUAA
.........((((((....((((((((.((((..(((....)))...............((((.(((...((....)).))).))))....))))))))))))....)))))).. ( -29.40)
>DroEre_CAF1 172438 114 - 1
GACUGUUGCAUUUUGGAAGCUUCGAAGCUGCCAACUGGGAAUAGAGAUAAACACAGAAAAAAAGGG-AGGCCCAUGGGGUUCAUUUUAAUAGGCACUUCUGAGAAUAUAAAAUAA
.........((((((....(((.((((.((((..(((................)))...((((..(-((.((....)).))).))))....)))))))).)))....)))))).. ( -24.49)
>DroYak_CAF1 170648 115 - 1
GACUGUUGCAUUUUGGAAGCUUCGAAGCUGCCAACUGGGAAUGGAGAUAAACACAGAAAAAAAGAGAAAGCCCAUGGGAUUAAUUUUAUUAGGCACUUCGGGGAAUGUUAAAUAA
...........(((((...((((((((.((((..(((................))).....((((.....((....)).....))))....))))))))))))....)))))... ( -22.89)
>consensus
GACUGUUGCAUUUUGGAAGCUUCGAAGCUGCCAACUGGGAACGGAGAUAAACACAGAAAAAAAGGGAAAGCCCAUGGGAUUCAUUUUAAUAGGCACUUCGGAGAAUAUAAAAUAA
.........((((((....((((((((.((((..(((....))).................((((.....((....)).....))))....))))))))))))....)))))).. (-24.78 = -24.22 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:18 2006