Locus 4422

Sequence ID 2R_DroMel_CAF1
Location 14,532,948 – 14,533,056
Length 108
Max. P 0.500000
window7071

overview

Window 1

Location 14,532,948 – 14,533,056
Length 108
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 81.58
Mean single sequence MFE -26.25
Consensus MFE -15.80
Energy contribution -16.83
Covariance contribution 1.03
Combinations/Pair 1.27
Mean z-score -1.72
Structure conservation index 0.60
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14532948 108 + 20766785
-UACGAAUUACACAAAACUCCAUUGAAAUCAGAUC--GCGUGAUGGUA-AUGGCCAUAAAUCCCAUCAGCUGCAUACAUUUACAUACGUAUGCAAAUGAUGG-CCGUGCAGAU
-.........(((......((((((..((((....--...))))..))-)))).........((((((..(((((((..........)))))))..))))))-..)))..... ( -28.40)
>DroSec_CAF1 165243 108 + 1
-UACGAAUUACUUGAAACUCCAUUGAAAUCAGAUC--GCGUGAUGGUA-AUGGUCAUAAAUCCCAUCAGCUGCAUACAUUUACAUACGUAUGCAAAUGAUGG-CCGUGCAGAU
-((((..............((((((..((((....--...))))..))-)))).........((((((..(((((((..........)))))))..))))))-.))))..... ( -28.40)
>DroSim_CAF1 166444 108 + 1
-UACGAAUUACUUGAAACUCCAUUGAAAUCAGAUC--GCGUGAUGGUA-AUGGCCAUAAAUCCCAUCAGCUGCAUACAUUUACAUACGUAUGCAAAUGAUGG-CCGUGCAGAU
-((((..............((((((..((((....--...))))..))-)))).........((((((..(((((((..........)))))))..))))))-.))))..... ( -28.20)
>DroEre_CAF1 171577 108 + 1
-UACGAAUUACUUCAUACUCCAUUGAAAUCAGAUC--GCGCGAUGGUA-AUGGCCAUAAAUCCCAUCAGCUGCACGUAUUUACAUACGUAUGCAAAUGAUGC-UCGUGCAGAU
-..........((((........))))........--((((((((((.-...)))).......(((((..(((((((((....))))))..)))..))))).-)))))).... ( -27.20)
>DroYak_CAF1 169779 108 + 1
-UACGAAUUACUCGAAACUCCAUUGAAAUCAGAUC--GCGUGAUGGUA-AUGGCCAUAAAUCCCAUCAGCUGCAUAUAUUUACAUAUGUAUGCAAAUGAUGC-CCGUGCAGAU
-((((..............((((((..((((....--...))))..))-))))..........(((((..(((((((((......)))))))))..))))).-.))))..... ( -26.60)
>DroAna_CAF1 185128 94 + 1
GAAAGUAUUAAUUCCCACAUC------AUCAAAUCCGGCGCGAUGGUAAAUUGCAAUAAGUCCCGGCGGCUG-------------GCAUAUGCAAAUCGUGCGGCAGGCAGAU
.....................------.......(((.((((((.(((...(((....((((.....)))).-------------)))..)))..)))))))))......... ( -18.70)
>consensus
_UACGAAUUACUUGAAACUCCAUUGAAAUCAGAUC__GCGUGAUGGUA_AUGGCCAUAAAUCCCAUCAGCUGCAUACAUUUACAUACGUAUGCAAAUGAUGC_CCGUGCAGAU
.....................................((((((((((.....)))))......(((((..(((((((..........)))))))..)))))...))))).... (-15.80 = -16.83 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:16 2006