Locus 4418

Sequence ID 2R_DroMel_CAF1
Location 14,523,558 – 14,523,652
Length 94
Max. P 0.548275
window7063

overview

Window 3

Location 14,523,558 – 14,523,652
Length 94
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.31
Mean single sequence MFE -30.67
Consensus MFE -16.62
Energy contribution -15.77
Covariance contribution -0.86
Combinations/Pair 1.32
Mean z-score -1.94
Structure conservation index 0.54
SVM decision value 0.03
SVM RNA-class probability 0.548275
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14523558 94 + 20766785
CUCGAGGGUGUGGCCAUCAUGUCGAACGGCAAUAUCUUGGUCUGCGAUCGAGAGAAUCACCGCGUCCAAGUCUUCUGAUCAGAAUCCGCGAAAA--
.(((.((..((((...((.((((....))))...((((((((...))))))))))....))))..))..(..((((....))))..).)))...-- ( -25.80)
>DroVir_CAF1 199562 90 + 1
CUCGAGGGCGUGGCCAUUAUGUCCAAUGGCAAUAUUUUGGUAUGCGAUCGCGAAAAUCAUCGUGUUCAGGUAUUCUAAGC------CACGCCCAAG
.....(((((((((.....((((....)))).....((((.((((((.(((((......))))).))..)))).))))))------)))))))... ( -33.80)
>DroPse_CAF1 152630 91 + 1
CUCGAGGGCGUGGCCAUCAUGUCGAAUGGCAACAUCUUGGUCUGCGAUCGCGAGAAUCAUCGUGUCCAAGUCUUCUAAUAGG---CCAUGGCCA--
.....((.(((((((..........(((....)))(((((.(.((((((....))....))))).)))))..........))---))))).)).-- ( -33.50)
>DroWil_CAF1 235947 87 + 1
CUCGAAGGUGUGGCCAUCAUGUCCAAUGGCAACAUUUUGGUAUGCGAUCGCGAGAAUCAUCGUGUUCAAGUCUUUUGAUAGCAACCC---------
....(((((((.(((((........))))).)))))))(((.(((((.(((((......))))).))..(((....))).)))))).--------- ( -26.40)
>DroMoj_CAF1 247474 90 + 1
CUCGAGGGCGUGGCCAUUAUGUCGAAUGGCAAUAUUUUGGUAUGCGAUCGUGAAAAUCAUCGUGUUCAGGUCUUCUGAGC------CACGACCCAG
.....(((((((((((((......)))))).............(((((.((....)).)))))((((((.....))))))------)))).))).. ( -31.00)
>DroPer_CAF1 154836 91 + 1
CUCGAGGGCGUGGCCAUCAUGUCGAAUGGCAACAUCUUGGUCUGCGAUCGCGAGAAUCAUCGUGUCCAAGUCUUCUAAUAGG---CCAUGGCCA--
.....((.(((((((..........(((....)))(((((.(.((((((....))....))))).)))))..........))---))))).)).-- ( -33.50)
>consensus
CUCGAGGGCGUGGCCAUCAUGUCGAAUGGCAACAUCUUGGUAUGCGAUCGCGAGAAUCAUCGUGUCCAAGUCUUCUAAUAGG___CCACGACCA__
...((((((((.(((((........))))).))...((((...(((((..........)))))..))))))))))..................... (-16.62 = -15.77 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:09 2006