Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,518,788 – 14,518,887 |
Length | 99 |
Max. P | 0.842911 |
Location | 14,518,788 – 14,518,887 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -9.71 |
Energy contribution | -11.05 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.20 |
Mean z-score | -2.73 |
Structure conservation index | 0.40 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14518788 99 - 20766785 -CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCAGGCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAUCUCGAUUU-ACUC--AAAAAAAAUUGGCUGAA -......((((....((.....))(((((((....(((((...(((((((.(....)))))))-))))))....)))..)-))).--...........)))).. ( -26.20) >DroSec_CAF1 151111 97 - 1 -CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCAGGCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAGCUUGCUUU-ACUC--AAAAAAA--UGGCUGAA -......((((.((((((((.(((......)))..(((((...(((((((.(....)))))))-)))))).).)))))))-...(--(......--)))))).. ( -27.70) >DroSim_CAF1 152263 97 - 1 -CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCAGGCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAGUUCGCUUU-GCAC--AAAAAAA--UGGCUUAA -........(((((.(((((.(((......)))..(((((...(((((((.(....)))))))-)))))).))).)))))-))..--.......--........ ( -26.10) >DroEre_CAF1 156611 95 - 1 ---AGUACAGCAAAAGCAACAGGCAGUAUCGUCC-GCAGCCCAAAAAAGUAGGCAACACUUUU-UGCUGCAGCUUGUUUU-ACUUU-AAAAAAA--UGCCUGAA ---......((....))..(((((..........-(((((...(((((((.(....)))))))-)))))).....(((((-.....-...))))--)))))).. ( -25.00) >DroYak_CAF1 154967 99 - 1 -CGAAUACAGCAAAAGCAACAGGCAUUAUCAUCG-GAAGCCCAAAAAAGUAGGCAACACUUUUUUCCUACAGCUUGCUUU-ACUUUCAAAAAAA--UGACUCAA -.(((...((((..(((....(((.((.......-)).))).((((((((.(....)))))))))......)))))))..-...))).......--........ ( -16.80) >DroAna_CAF1 165898 87 - 1 UCCAGAAAAGCGAAAGCAUCAGGCGGUGUGG-----C-----AGUGAGGCAGGCAACACUUAU-UGCUGCUCUUUGAUUUUAC----AAAAAAA--GAAGUAUA .........((....))((((((.((.(..(-----(-----((((((...(....).)))))-)))..))))))))).....----.......--........ ( -23.60) >consensus _CGAAUACAGCAAAAGCAACAGGCAGUAUCGUCA_GCAGCCCAAAAAAGUAGGCAACACUUUU_UGCUGCAGCUUGCUUU_ACUC__AAAAAAA__UGGCUGAA ............(((((((...((((((................((((((.(....))))))).))))))...)))))))........................ ( -9.71 = -11.05 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:03 2006