Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,546,211 – 2,546,302 |
Length | 91 |
Max. P | 0.534470 |
Location | 2,546,211 – 2,546,302 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -20.08 |
Consensus MFE | -14.53 |
Energy contribution | -14.78 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.04 |
Structure conservation index | 0.72 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2546211 91 - 20766785 AAACUCUAAAACUGUCUACUUACCUCAAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUUGCGCCGACAUACUCCUUGA ............(((((...........))))).((((((.(((.(((...))))))..((((((.((....))))))))....)))))). ( -21.00) >DroSec_CAF1 24658 91 - 1 AAACUCUAAAAUUGUCUACUUACCUCGAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUUGAGGUGACAUACUCCUUGA ............((((.....((((((((((((........(((((((.........))))))).)))))))))))))))).......... ( -22.60) >DroSim_CAF1 21232 87 - 1 AAACUCUAAA----UCUACUUACCUCGAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUGUUGGUGACAUACUCCUUGA .........(----(((.(.......).))))..((((((.(((((((.........))))))).((((........))))...)))))). ( -18.60) >DroEre_CAF1 21165 90 - 1 AAACUCUGAAAU-UUCCACCUACCUCGAAGAACACAAGGAACCAACUGAGCGAGUGCAAGUUGGCAGUCUUCGCGGUGACAUACUCCUUGA ............-.....................((((((.((((((..((....)).))))))..(((........)))....)))))). ( -19.70) >DroYak_CAF1 20139 90 - 1 CCAUUCUAAAUG-UUCUACUUACCUCAAAGAAUACAAGGAUCCAACUUAGCGAGUGGAAGUUGGAAGUCUUGGCGCUGACAUACUCCUUGA ..........((-((((...........))))))((((((((((((((.........)))))))).(((........)))....)))))). ( -21.60) >DroAna_CAF1 20145 81 - 1 -UUCUCU---------GACUCACCUCAAAAAGUAUUAGGAACCAACUAAGAGAGUGAAAGUUGGCGGUUUUCCCGGCAACAUAUUGCUUGU -......---------...(((((((........((((.......))))))).))))..((((.(((.....))).))))........... ( -17.00) >consensus AAACUCUAAAA___UCUACUUACCUCAAAGAUAACAAGGAACCAACUUAGCGAGUGGAAGUUGGCUGUCUUCGCGGUGACAUACUCCUUGA ..................................((((((.(((((((.........)))))))..(((........)))....)))))). (-14.53 = -14.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006