Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,493,775 – 14,493,875 |
Length | 100 |
Max. P | 0.737769 |
Location | 14,493,775 – 14,493,875 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.42 |
Mean single sequence MFE | -41.91 |
Consensus MFE | -23.07 |
Energy contribution | -24.15 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.19 |
Mean z-score | -1.80 |
Structure conservation index | 0.55 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14493775 100 + 20766785 CGCCAUCGAGCGCAGCAUGUUCGUAGGAGCCUCAAACGCUGAU------CAAGGAGGCGAUUUCAUCCUGCCAUACGGACAAGUUUUCCGCUUUGCCAA------CAC---UAA---C .((....(((((.(((.((((((((((.(((((..........------....)))))(....)......)).)))))))).)))...))))).))...------...---...---. ( -25.74) >DroSec_CAF1 125912 106 + 1 CGCCAUCGAGCGCAGCAUGUUCGUCGGAGCCUCAUACGAUGAUCUCGCUCGAGGAGGCGAGUUCGUCCUGCCAAAUGGACAGGUGUUGCGCUUUGGCAA------CGC---UAG---C .((((..(((((((((((((((....)))).......(((((.((((((......)))))).)))))(((((....)).))))))))))))))))))..------...---...---. ( -46.00) >DroSim_CAF1 127059 106 + 1 CGCCAUCGAGCGCAGCAUGUUCGUCGGAGCCUCAUACGACGAUCUCGCUCGAGGAGGCGAGUUCGUCCUGCCAAACGGACAGGUGUUGCGCUUUGGCAA------CGC---UAG---C .((((..(((((((((((((((((..(.((.......(((((.((((((......)))))).)))))..)))..)))))))..))))))))))))))..------...---...---. ( -47.80) >DroEre_CAF1 131075 115 + 1 GGCCAUCGAGCGCAGUAUGUUCGAAGGAGCCGCCCAAGUUUCCGGCGGUCAAGGUAGCGAUCUCGUCCUGCCAACCGGACGAGUGUUGCGCUUUGCCAAUAGCAACACCAAUAA---C .(((.(((((((.....))))))).((((.(......).)))))))((.((((((.((((((((((((........))))))).))))))))))))).................---. ( -43.00) >DroYak_CAF1 129091 118 + 1 GGCCAUCGAGCGCAGCAUGUUCGAAGGAGCCGCUCAAGGGGCCGGCGGUCAAGGAAGCGAUUUAAUCCUGGCAAACGGACGAGUGCUGCGCUUUGCCAAUGGCAACACCAUUAACCAC (((....((((((((((((((((.....((((((.....)).)))).((((.(((..........)))))))...)))))..))))))))))).)))(((((.....)))))...... ( -47.00) >consensus CGCCAUCGAGCGCAGCAUGUUCGUAGGAGCCUCACACGAUGAUCGCGCUCAAGGAGGCGAUUUCGUCCUGCCAAACGGACAAGUGUUGCGCUUUGCCAA______CAC___UAA___C .......((((((((((((((((((((((((((....................)))))(....).)))).....)))))))..))))))))))......................... (-23.07 = -24.15 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:54 2006