Locus 4406

Sequence ID 2R_DroMel_CAF1
Location 14,486,024 – 14,486,131
Length 107
Max. P 0.696613
window7043

overview

Window 3

Location 14,486,024 – 14,486,131
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 84.40
Mean single sequence MFE -36.14
Consensus MFE -24.30
Energy contribution -24.66
Covariance contribution 0.36
Combinations/Pair 1.12
Mean z-score -1.95
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.696613
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14486024 107 + 20766785
CUGUUGGCGCAGGGUUGCAUUCGGCACGCCAGUGGUGCGCAUCUGGCGGGAAGCCAAAAAAGCAAUUAGAUGCCAUGCGAUAGUUAUGGCUAGAUGUGCAAUAAAUA
(..((((((....((((....)))).))))))..)((((((((((((((....))......(((......)))(((((....).))))))))))))))))....... ( -38.50)
>DroSec_CAF1 117849 106 + 1
CUGUUCGCGCAGGGUUGUAUUCGGCACGGCAGUGGUGCGCAUCUGGCGGCAAGCGA-UAAUGCAAUUAGUCGCCAUGCGAUAGUUUUAGCUAGAUGUGCAAUAAUUA
....((((((...((((....))))...)).))))((((((((((((.(((.....-...))).....(((((...))))).......))))))))))))....... ( -35.90)
>DroSim_CAF1 118990 106 + 1
CUGUUCGCGCAGGGUUGUAUUCGGCACGGCAGUGGUGCGCAUCUGGCGGCAAGCGA-UAAUGCAAUUAGUCGCCAUGCGAUAGUUUUAGCUAGAUGUGCAAUAAUUA
....((((((...((((....))))...)).))))((((((((((((.(((.....-...))).....(((((...))))).......))))))))))))....... ( -35.90)
>DroEre_CAF1 119590 106 + 1
CUGUCAGCGCAGGGUUGUAUUCGGCACGCCAGUGGUGCGCAUCUGGCGGGAAGCGA-UAAUGCAAAUUUCCGCCAGGCGAUGCUUAUAGCUAGAUGUGCAAAAAUUA
......(((((.(((((((.(((((.((((...)))).)).(((((((((((((..-....))...))))))))))))))....)))))))...)))))........ ( -41.20)
>DroYak_CAF1 121240 95 + 1
CUGUCAGCGCAGGGUUGUAUUCAGCGCGCCAGUGGUGCGCAUUUGGCGGGAAGGGA-UAAUGCA-----------CGCGAUAGUUUUAGCUAGAUGUGCAAAAAUGU
(((((((.((......)).....(((((((...)))))))..))))))).......-...((((-----------((...((((....))))..))))))....... ( -29.20)
>consensus
CUGUUAGCGCAGGGUUGUAUUCGGCACGCCAGUGGUGCGCAUCUGGCGGGAAGCGA_UAAUGCAAUUAGUCGCCAUGCGAUAGUUUUAGCUAGAUGUGCAAUAAUUA
((((....))))............(((....))).((((((((((((.....((.......)).......(((...))).........))))))))))))....... (-24.30 = -24.66 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:50 2006