| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,480,458 – 14,480,559 |
| Length | 101 |
| Max. P | 0.653527 |
| Location | 14,480,458 – 14,480,559 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.41 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -24.34 |
| Energy contribution | -25.59 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14480458 101 - 20766785 GG-GGGCAGCAUGGUUGAAUGGCUGAAAGGGAGGGCUUAUAAGCCGGAUACCCGGCGUCCAAAUGCACACAAUCCCAGCCAGCUAGCCAGCAUUGACUU--GCU (.-(((((((.((((((..(((((....((((.(((......(((((....)))))........)).)....)))))))))..))))))))..)).)))--.). ( -36.14) >DroSec_CAF1 112375 102 - 1 GGGGGGCAGCAUGGUUGAAUGGCUGAAAAGGAGGGCUUAUAAGCCGGAUACCCGGCGUCCAAAUGCACACAAUCCCAGCCAGCCAGCCAGCAUUGACUU--GCU ((.(((((((.((((((..((((((....(((.(((......(((((....)))))........)).)....)))))))))..))))))))..)).)))--.)) ( -37.74) >DroEre_CAF1 114057 89 - 1 -----GCAGCAUGGUUGACUGGCUGAAAGGGAGGGCUUAUAAGCCGGAUACCCGGCGUCCAAAUGCACACAAUCCCAGC--------CAGCAUUGACUU--GCA -----...(((.(((..(((((((....((((.(((......(((((....)))))........)).)....)))))))--------)))..)..))))--)). ( -33.34) >DroYak_CAF1 115521 92 - 1 ----GGCAGCAUGGUUGAAUGGCUGAAAGGGAGGGCUUAUAAGCCGGAUACCCGGCGUCCAAAUGCACACAAUCCCAGC--------CAGCAUUGACUCCAGCA ----....((.(((.......((((...((((.(((......(((((....)))))........)).)....))))...--------)))).......))))). ( -29.88) >consensus ____GGCAGCAUGGUUGAAUGGCUGAAAGGGAGGGCUUAUAAGCCGGAUACCCGGCGUCCAAAUGCACACAAUCCCAGC________CAGCAUUGACUU__GCA ........((..(((..(...((((...((((.(((......(((((....)))))........)).)....)))).((......)))))).)..)))...)). (-24.34 = -25.59 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:45 2006