| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,479,871 – 14,479,965 |
| Length | 94 |
| Max. P | 0.822616 |
| Location | 14,479,871 – 14,479,965 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 66.01 |
| Mean single sequence MFE | -15.93 |
| Consensus MFE | -13.05 |
| Energy contribution | -12.83 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14479871 94 - 20766785 AUAGGAAAAAUAUGUGUAUGCCAGUUUGGAAUAAUAUUGGCAGUAAGUUGUUUUCUUUAGAAAGCGAUACGUAUGAAA------------UUUAAUCAUUCAAUAU .........((((((...(((((((.(......).)))))))....(((((((((....)))))))))))))))....------------................ ( -19.70) >DroSim_CAF1 112871 104 - 1 ACAGGAAAAAUAUGUGUAUGCAAGUUUCGAAUAAUAUUGGCAGUAAGUUGUUUUCUUUAGAAAGCGAUACGUAGGAAAUUUUGUAUGUUAUUAAGUCAUUCAUU-- ....((((....(((....)))..)))).........((((.....(((((((((....)))))))))(((((.((....)).)))))......))))......-- ( -16.50) >DroEre_CAF1 113467 80 - 1 AGGCGAAAAA--UUAAUAUGCAGGUUUGUUAUAAUAUUUGUAUUAGGUCGUUUUCUUCAGAAAUCGAUAC------------------------UUCAUUCCUAAU (((.(((...--.....((((((((.(......).))))))))...((((.((((....)))).))))..------------------------)))...)))... ( -11.60) >consensus ACAGGAAAAAUAUGUGUAUGCAAGUUUGGAAUAAUAUUGGCAGUAAGUUGUUUUCUUUAGAAAGCGAUACGUA_GAAA____________UU_AAUCAUUCAUUAU ....(((...........(((((((..........)))))))....(((((((((....)))))))))..............................)))..... (-13.05 = -12.83 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:44 2006