Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,479,605 – 14,479,706 |
Length | 101 |
Max. P | 0.992475 |
Location | 14,479,605 – 14,479,706 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.12 |
Mean single sequence MFE | -42.96 |
Consensus MFE | -33.88 |
Energy contribution | -34.96 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.14 |
Mean z-score | -2.81 |
Structure conservation index | 0.79 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14479605 101 + 20766785 CCCCUUAUGGCCGCGAUUGGAAUUGGAGGUGCCCCUAAUGGGGCUGGGUCACCCAGAUCUAGGUGGCCAAAAGGUUGGCUGGCUAAGUGCUUUGCCAUGGG ((((((.(((((((..(((((.((((..(.(((((....))))).....)..)))).)))))))))))).)))).((((.(((.....)))..)))).)). ( -46.50) >DroSec_CAF1 111547 94 + 1 -------UGGCCGCGAUUGGAAUUGAAGGUGCCCUUAAUGGGGCUGGGUCACCCAGAUCUAGGUGGCCAAAAGGUUGGCUGGCUAAGUGGUUUGCCAUGGG -------(((((((..(((((.........(((((....)))))((((...))))..))))))))))))......((((..(((....)))..)))).... ( -35.40) >DroSim_CAF1 112628 101 + 1 CCCCUUAUGGCCGCGAUUGGAAUUGAAGGUGCCCUUAAUGGGGCUGGGUCACCCAGAUCUAGGUGGCCAAAAGGUUGGCUGGCUAAGUGGUUUGCCAUGGG ((((((.(((((((..(((((.........(((((....)))))((((...))))..)))))))))))).)))).((((..(((....)))..)))).)). ( -41.40) >DroEre_CAF1 113199 101 + 1 CCCCUUAUGGCCGCGAUUGGAGCUGGAGGUGCCCUUAAUGGGGCUGGGUCACCCAGAUCUAGGUGGCCCAAAGGUUGUCCUGCAAAAUUGUUUGCCAUGGU ....(((((((.((((((...((.(((.(.(((((....)))))(((((((((........))))))))).....).))).))..))))))..))))))). ( -43.30) >DroYak_CAF1 114649 101 + 1 CCCCUUAUGGCCCCGAUUGGCAGCGCAGUUGCCCUUAAUGGGGCUGGGUCACCCAGAUCUAGGUGGCCCAAAGGUUGGCUUGCCAAAUGGUUUGUCAUGAG ...((((((((.(((.((((((((.(((..(((((....)))))(((((((((........)))))))))....))))).)))))).)))...)))))))) ( -48.20) >consensus CCCCUUAUGGCCGCGAUUGGAAUUGAAGGUGCCCUUAAUGGGGCUGGGUCACCCAGAUCUAGGUGGCCAAAAGGUUGGCUGGCUAAGUGGUUUGCCAUGGG ..((((.(((((((................(((((....)))))((((((.....)))))).))))))).)))).((((..(((....)))..)))).... (-33.88 = -34.96 + 1.08)
Location | 14,479,605 – 14,479,706 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.12 |
Mean single sequence MFE | -35.05 |
Consensus MFE | -25.90 |
Energy contribution | -27.54 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.84 |
Structure conservation index | 0.74 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.971181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14479605 101 - 20766785 CCCAUGGCAAAGCACUUAGCCAGCCAACCUUUUGGCCACCUAGAUCUGGGUGACCCAGCCCCAUUAGGGGCACCUCCAAUUCCAAUCGCGGCCAUAAGGGG .((.((((...((.....))..)))).((((.((((((((((....)))))......(((((....)))))..................))))).)))))) ( -39.00) >DroSec_CAF1 111547 94 - 1 CCCAUGGCAAACCACUUAGCCAGCCAACCUUUUGGCCACCUAGAUCUGGGUGACCCAGCCCCAUUAAGGGCACCUUCAAUUCCAAUCGCGGCCA------- ....((((..........))))(((........((.((((((....)))))).))..((((......))))..................)))..------- ( -27.00) >DroSim_CAF1 112628 101 - 1 CCCAUGGCAAACCACUUAGCCAGCCAACCUUUUGGCCACCUAGAUCUGGGUGACCCAGCCCCAUUAAGGGCACCUUCAAUUCCAAUCGCGGCCAUAAGGGG .((.((((..........)))).....((((.((((((((((....)))))......((((......))))..................))))).)))))) ( -33.40) >DroEre_CAF1 113199 101 - 1 ACCAUGGCAAACAAUUUUGCAGGACAACCUUUGGGCCACCUAGAUCUGGGUGACCCAGCCCCAUUAAGGGCACCUCCAGCUCCAAUCGCGGCCAUAAGGGG .(((((((..........((.(((.......((((.((((((....)))))).))))((((......))))...))).))..........)))))..)).. ( -36.35) >DroYak_CAF1 114649 101 - 1 CUCAUGACAAACCAUUUGGCAAGCCAACCUUUGGGCCACCUAGAUCUGGGUGACCCAGCCCCAUUAAGGGCAACUGCGCUGCCAAUCGGGGCCAUAAGGGG ((.(((.(...((..((((((.((((.....((((.((((((....)))))).))))((((......))))...)).))))))))..)).).))).))... ( -39.50) >consensus CCCAUGGCAAACCACUUAGCCAGCCAACCUUUUGGCCACCUAGAUCUGGGUGACCCAGCCCCAUUAAGGGCACCUCCAAUUCCAAUCGCGGCCAUAAGGGG ....((((..........)))).....((((.((((((((((....)))))......((((......))))..................))))).)))).. (-25.90 = -27.54 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:43 2006