| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,478,232 – 14,478,323 |
| Length | 91 |
| Max. P | 0.905943 |
| Location | 14,478,232 – 14,478,323 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 70.76 |
| Mean single sequence MFE | -13.75 |
| Consensus MFE | -10.81 |
| Energy contribution | -8.71 |
| Covariance contribution | -2.10 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14478232 91 + 20766785 -----GUUGUUGCAUGCGCAUCACUUUGUAAUUUAUAUCCAAUAAUGAAGGAUUAAGUAACAGAAGGUA----AUCACUUUUAUAAAUAAAGUGUAGCAA- -----....((((.(((((.......(((.(((((.((((.........))))))))).)))((((((.----...)))))).........)))))))))- ( -17.70) >DroSec_CAF1 110173 99 + 1 AGAACGGUGUUAGAAUCUCAUCAUGUUUU--CUUACAAUCAAUUAUAACAGAUUAUAUACAAGAAGCUAGCCAACCACUUUCAUAUAAAAAAUCUAACAUC .....(((((((((.........(((...--...)))...............((((((..(((..............)))..))))))....))))))))) ( -11.24) >DroSim_CAF1 111249 99 + 1 AGUAUGGUGUUAGAAUCUCAUCAUGUUUU--UUUACAAUCAAUUAUAACAGAUUAUGUAUAAGAAGCUAACCAACCACUUUCAUAUAAAAAAUCUAACAUC .....(((((((((..........(((((--(((((((((..........)))..)))).)))))))...........(((......)))..))))))))) ( -12.30) >consensus AG_A_GGUGUUAGAAUCUCAUCAUGUUUU__UUUACAAUCAAUUAUAACAGAUUAUGUAAAAGAAGCUA_CCAACCACUUUCAUAUAAAAAAUCUAACAUC .....(((((((((.....(((.((((...................))))))).........((((...........))))...........))))))))) (-10.81 = -8.71 + -2.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:41 2006