Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,290,896 – 1,291,014 |
Length | 118 |
Max. P | 0.613456 |
Location | 1,290,896 – 1,291,014 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.85 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -15.11 |
Energy contribution | -15.80 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.10 |
Mean z-score | -1.66 |
Structure conservation index | 0.68 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1290896 118 + 20766785 AAAUUAAGUCGACGUUAUCUACACUUUUGUGCUCGCGAACGUGAUUAUAAACACAACUCGAAGACUAAAAGGUAAUCUUUAAAAAUAAGGUUCAAGAUAACGUUUCUGGCGCUAUA--AA .......(((((((((((((.(((....))).....(((((((........))).....(((((.((.....)).))))).........)))).))))))))))...)))......--.. ( -23.50) >DroSec_CAF1 20061 120 + 1 AAAUUAAGUCGACGUUAUCUACACUUUUGUACUCGCAAACGUGAUUACAAACGCAACUCAAAGAGUAAAAGGUAAUCUCUAAAAAUAAGGUUCAAGAUAACGUUUCUGGCGCUAUAUAAA .......(((((((((((((..(((((((((.((((....)))).)))))...........((((...........)))).......))))...))))))))))...))).......... ( -24.10) >DroSim_CAF1 23376 108 + 1 AAAUUAAGUAGACGUUAUCUACACUUUU-----------UGUGAUUACAAACGCAACUCAAAGAGUAAAAGGUAAUCUCUAAAAAUAAGGUUCAAGAUAACGUUUCUGGCGCUAUA-AAA ......((.(((((((((((..(((((.-----------.(.((((((.......((((...)))).....)))))).).......)))))...))))))))))))).........-... ( -21.50) >DroEre_CAF1 20333 114 + 1 CAAUCAAGUCAACGUUAUCUACACUUUUGUAC----AUACGUGAUCAUAGCCGUAACUCAAAGAGUAAAAGUUAAUCUUCAAAAA-AAGUUUCAAGAUAACGUUUCUGGCGCUGUA-AAA .......(((((((((((((..((((((....----.....(((...((((..(.((((...)))).)..))))....)))..))-))))....)))))))))...))))......-... ( -20.30) >consensus AAAUUAAGUCGACGUUAUCUACACUUUUGUAC____AAACGUGAUUACAAACGCAACUCAAAGAGUAAAAGGUAAUCUCUAAAAAUAAGGUUCAAGAUAACGUUUCUGGCGCUAUA_AAA .......(((((((((((((...(((((............(((........))).((((...)))))))))..((((((.......))))))..))))))))))...))).......... (-15.11 = -15.80 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:31 2006