| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,477,043 – 14,477,134 |
| Length | 91 |
| Max. P | 0.924455 |
| Location | 14,477,043 – 14,477,134 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 85.96 |
| Mean single sequence MFE | -22.16 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.88 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14477043 91 - 20766785 GCAGCAUUUGUUGCAGCAGUUGCGCAAUUGCUGCAGACGAGCUGCUGCUGCUGCAAAAAA----GAAGGAAAGCAAAAUAAACAAGCCGACGAGC (((((((((((((((((((((....)))))))))).))))).))))))((((........----.......)))).................... ( -30.66) >DroSec_CAF1 108919 82 - 1 GCAGCAUUUGUUGCAGCAGUUGCGCAAUUGCUGCAGACGAGCUGG---------AGAAAA----AAAGGAAAACAAAAUAAACAAGCCGACGAGC .((((..((((((((((((((....)))))))))).)))))))).---------......----............................... ( -21.50) >DroSim_CAF1 109985 83 - 1 GCAGCAUUUGUUGCAGCAGUUGCGCAAUUGCUGCAGACGAGCUGA---------AGAAAAA---AAAAGAAAACAAAAUAAACAAGCCGACGAGC .((((..((((((((((((((....)))))))))).)))))))).---------.......---............................... ( -21.30) >DroEre_CAF1 110646 79 - 1 GCAGCAUUUGUUGCAGCAGUUGCGCAAUUGCUGCAGACGAGCUGG---------AAAAA-------AGGAAAACAAAAUAAACAAGCCGACGAGC .((((..((((((((((((((....)))))))))).)))))))).---------.....-------............................. ( -21.50) >DroYak_CAF1 112053 86 - 1 GCAGCAUUUGUUGCAGCAGUUGCGCAAUUGCUGCAGACGAGUUGG---------AAAAAAAAAUGAAGGAAAACAAAAUAAACAAGCCGACGAGC ...((..((((((((((((((....)))))))))).))))(((((---------.............(.....)............)))))..)) ( -21.11) >DroAna_CAF1 121353 74 - 1 GCCGCAUUUGUUGCAGCAGUUGCGCAAUUGCAGCAGAAGAGCAGA---------AAA------------AAGGCAAAAUAAACAAGCCGACGAGC (((((.(((((((((((......))...)))))))))........---------...------------..(((...........)))).)).)) ( -16.90) >consensus GCAGCAUUUGUUGCAGCAGUUGCGCAAUUGCUGCAGACGAGCUGG_________AAAAAA_____AAGGAAAACAAAAUAAACAAGCCGACGAGC .((((.....(((((((((((....)))))))))))....))))................................................... (-18.69 = -18.88 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:40 2006