Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,476,072 – 14,476,163 |
Length | 91 |
Max. P | 0.597187 |
Location | 14,476,072 – 14,476,163 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 67.12 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -11.50 |
Energy contribution | -13.54 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.24 |
Mean z-score | -1.58 |
Structure conservation index | 0.50 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14476072 91 + 20766785 --------------UUUUUUAUCC----GUAUGCAUGAAUAU--A-AUUUGUAGCCAUAAGGCUGCAUAAGGUUAAGAUGCUUAGUUGCGGGUCGGGAACUAAGAACUGAGA --------------((((..((((----(((.((((....((--.-...(((((((....)))))))....))....)))).....)))))))..))))............. ( -24.20) >DroSim_CAF1 109026 95 + 1 --------------UUUAUCAUAUAAAUUUAUUCCUGAAUAU--A-AUUUGUAGCCAUGAGGCUACAGAAGGUUAAAAAGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGA --------------.............(((((((((((....--.-.(((((((((....)))))))))..........((......))...))))))).))))........ ( -21.70) >DroEre_CAF1 109687 103 + 1 ---UAUUCGUGGGCUAAAUUAUCC----UGAUGUAUGAAUAU--CAUUUUGUGGCCAAGAGGCUACAGAAGGUUAAGAUGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGA ---..((((..(.((((((.(((.----((((((....))))--))((((((((((....))))))))))......))))))))))..))))((((..........)))).. ( -32.10) >DroYak_CAF1 111055 101 + 1 -----UUCAGGGGCUUUAUUAUCU----UUAUGUAUGAAUAU--UAGUUUGUAGCCAUGAGGCGGCAGAAGGUUAAGAUGUUUAGUGGCGGGUCGGGAACUAAGAACCGAGA -----....((..(((.....(((----(..(((.(((((((--(..(((((.(((....))).))))).......))))))))...)))....))))...)))..)).... ( -20.60) >DroAna_CAF1 120413 93 + 1 AAUUGUUU-----CUAAACUAUCU----AUAUUUCUUAAAAUAUUCACUU----CC-AGAAUAUGUAAAAGGUUAAA--GCUAAGGU---AGUUGGAAACCCAGAACCGAGA ....((((-----((((.((((((----............((((((....----..-.))))))......(((....--))).))))---))))))))))............ ( -16.90) >consensus _____UU______CUUUAUUAUCU____UUAUGUAUGAAUAU__A_AUUUGUAGCCAUGAGGCUGCAGAAGGUUAAGAUGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGA ...............................................(((((((((....))))))))).((((......(((((((.(......).))))))))))).... (-11.50 = -13.54 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:39 2006