| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,458,828 – 14,458,928 |
| Length | 100 |
| Max. P | 0.836781 |
| Location | 14,458,828 – 14,458,928 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 91.04 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -24.43 |
| Energy contribution | -25.68 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14458828 100 - 20766785 UGUUACCUGUUUUCUGAAAAACAUAAACAGCGAUCGCUGUGGCUCCCUUUUCUCAAC-AUCCGAGCCUUAAUAGGGCUGCACGUUCAACUGGCAGCAGCGA .(((.((((((...............(((((....)))))(((((............-....)))))..))))))(((((.((......)))))))))).. ( -27.89) >DroSec_CAF1 91008 100 - 1 UGUUACCUGUUUUCUGAAAAACAUCAACAGCGAUCGCUUUGGCUACCUUUUCUCAAC-AUCCGAGCCUUAAUAGGGCUGCAAGUUGAACUGGCAGCAGCGA ((((...((((((....))))))..))))....(((((...(((.((.....(((((-.....(((((.....)))))....)))))...)).)))))))) ( -24.10) >DroSim_CAF1 92053 100 - 1 UGUUACCUGUUUUCUGAAAAACAUCAACAGCGAUCGCUGUGGCUACCUUUUCUCAAC-AUCCAAGCCUUAAUAGGGCUGCAAGUUCAACUGGCAGCAGCGA .(((.((((((...............(((((....)))))((((.............-.....))))..))))))(((((.((.....)).)))))))).. ( -26.47) >DroYak_CAF1 93689 100 - 1 UGUAACCUGUUUUCGAAAGAACAU-AACAGCGAUCGCUGUGGCUCCCUUUUUCAAACUUUUCGAGCCUUAAUAGGGCUGCAAGUUCUACUGGCAGCAGCGA .((..(((((((((....)))...-.(((((....)))))(((((.................)))))..))))))(((((.((.....)).))))).)).. ( -31.43) >consensus UGUUACCUGUUUUCUGAAAAACAUCAACAGCGAUCGCUGUGGCUACCUUUUCUCAAC_AUCCGAGCCUUAAUAGGGCUGCAAGUUCAACUGGCAGCAGCGA .(((.((((((...............(((((....)))))(((((.................)))))..))))))(((((.((.....)).)))))))).. (-24.43 = -25.68 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:35 2006