Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,455,314 – 14,455,423 |
Length | 109 |
Max. P | 0.538611 |
Location | 14,455,314 – 14,455,423 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.59 |
Mean single sequence MFE | -18.94 |
Consensus MFE | -14.12 |
Energy contribution | -13.98 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.24 |
Structure conservation index | 0.75 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14455314 109 + 20766785 AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGCU-------AGGA---GUAAGCCAAGAAG- ...((...((..........(((((((........))))))).........(((((((..(((((.................)))))..)))-------))))---))...))......- ( -21.33) >DroVir_CAF1 112464 96 + 1 AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGCCGAAGC----------AGGA---GAA----------- ....................(((((((........)))))))((((..(((((.....)))))...)))).......((.(((....))----------))).---...----------- ( -16.30) >DroGri_CAF1 105814 93 + 1 AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUCAGCGAUUGGCAGCGCAGAUUUACCAUGCUGAA-------------GGA---GAA----------- ...((...............(((((((........)))))))((((..(((((.....)))))...)))).......))........-------------...---...----------- ( -14.40) >DroWil_CAF1 148442 104 + 1 AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGUAAUAAUUUUAGCGAUUGGCAGCGCCGAUUUACCAUGGGCAAAAAUC-------G--C---AAAAAAUAUA---- ....................(((((((........))))))).....(((.((((.((((((......(((.((.....)).)))...))))-------)--)---.)))).))).---- ( -17.00) >DroYak_CAF1 90080 117 + 1 AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGCUAGGAGCUAGGA---GUAAGCCAAGCAAA ....................(((((((........))))))).........(((((((..(((((.................)))))..)))))))(((.((.---.....)).)))... ( -23.73) >DroAna_CAF1 98751 109 + 1 AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUCAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGCC-------AACUUCCAACAGCCAAC---- ...((((.............(((((((........)))))))((((..(((((.....)))))...))))..........((((.....)))-------)..))))..........---- ( -20.90) >consensus AUAGGAAAACAAAAUAGAAGUUAAUCUAAUAACAAAGAUUGAGCGCAAUAAUUUUAGCGAUUGGCAGCGCAGAUUUACCAUGGCCAAGAGC________AGGA___GAAAGCCAA_____ ...((...............(((((((........)))))))((((..(((((.....)))))...)))).......))......................................... (-14.12 = -13.98 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:34 2006