Locus 4393

Sequence ID 2R_DroMel_CAF1
Location 14,454,900 – 14,455,012
Length 112
Max. P 0.539164
window7026

overview

Window 6

Location 14,454,900 – 14,455,012
Length 112
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.89
Mean single sequence MFE -29.40
Consensus MFE -15.90
Energy contribution -17.78
Covariance contribution 1.88
Combinations/Pair 1.10
Mean z-score -2.10
Structure conservation index 0.54
SVM decision value 0.01
SVM RNA-class probability 0.539164
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14454900 112 - 20766785
GCCUGGGUUACCUGCCGAAAUUGAUUGAUAUCUGCAGGAUUCCAGGCCUUUUUAAAUAUUUAUCAGUAAACGG--AAGAAUUUAUUUUGUUUGGUAUAGCUUCUUGCAUACUUA
(((((((...(((((.((.(((....))).)).)))))..)))))))...................(((((((--((.......)))))))))((((.((.....))))))... ( -31.60)
>DroSec_CAF1 87096 102 - 1
GCCUGGGUUACCUGCCGAAAUUGAUUGAUUUCUGCAGGAUUCUAGGCCUGUUUAAAUAUUUAUCAGUAAAUGG--AAGAAUUUUUUGU----------GCUUCUUGCAUACUUA
(((((((...(((((.((((((....)))))).)))))..)))))))(((((((............)))))))--..........(((----------((.....))))).... ( -29.90)
>DroSim_CAF1 88385 112 - 1
GCCUGGGUUACCUGCCGAAAUUGAUUGAUUUCUGCAGGAUUCUAGGCCUGUUUAAAUAUUUAUCAGUAAAUGG--AAGAAUUUAUUUUGUAUGGUAUAGCUUUUUGCAUAUUUA
(((((((...(((((.((((((....)))))).)))))..))))))).....(((((((.(((((..((((((--(....)))))))....)))))..((.....))))))))) ( -31.80)
>DroEre_CAF1 88672 113 - 1
GGCUGGGUUACCUGCCGAAAUUGAUUGAUUCCUGGUGGAUUUUAGGGCUGCUUAAAUAUUUAUCAGAA-ACGGAAAGGAAUGUGGGUUGUUUGGAAUAGCUUCUUGCAUACAUA
(((.((....)).)))...............(((((((((((((((....)))))).)))))))))..-........(.(((..((..(((......)))..))..))).)... ( -26.90)
>DroYak_CAF1 89655 112 - 1
GGAUGGGUUACCUGCCGAAAUUGAUUGAUUCCUGAAGGAUUCUAGGGCUGUUCAAAUAUUUAUCACUAAGCGG--AUGAAUGUGUGUUCUUUGGCAUAGCUGCAUGCAUACUUA
(.((((((((..(((((((.......((.(((....))).)).......(..((.(((((((((........)--)))))))).))..))))))))))))).))).)....... ( -26.80)
>consensus
GCCUGGGUUACCUGCCGAAAUUGAUUGAUUUCUGCAGGAUUCUAGGCCUGUUUAAAUAUUUAUCAGUAAACGG__AAGAAUUUAUUUUGUUUGGUAUAGCUUCUUGCAUACUUA
(((((((...(((((.((((((....)))))).)))))..)))))))...................................................((.....))....... (-15.90 = -17.78 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:33 2006