Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,443,782 – 14,443,900 |
Length | 118 |
Max. P | 0.883141 |
Location | 14,443,782 – 14,443,900 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -34.89 |
Consensus MFE | -20.32 |
Energy contribution | -21.32 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.29 |
Structure conservation index | 0.58 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14443782 118 + 20766785 AAAGAUCCGCCGGAGAGGAAAUUGCGGGGGGGGGGGGUCCAAAGUCCAUGGAGAGGAAAAUGGAUUUUCCUGCGAUGGAAGCACCCCAAAGGACUGGCCAAAAAGAGCGGAAUCAAUA ...((((((((.....((..(.(.(.(((((((..((((((...(((.......)))...))))))..)))((.......)).))))...).).)..)).....).)))).))).... ( -40.30) >DroSec_CAF1 75812 111 + 1 AAAGAUCCGCCGGAGAGGAAAUUGCGGGGG------GCCCUAAGUCCAUGGAGAGGAAAAUGGAUUUUCCUGCGAUGGAAGCAACCCAAAGGACUGGCCAAAAAG-GCGGAAUCAAUA ...((((((((.....((...(((((((..------..)))...(((((.(..(((((((....))))))).).))))).)))).(((......))))).....)-)))).))).... ( -37.40) >DroSim_CAF1 77098 112 + 1 AAAGAUCCGCCGGAGAGGAAAUUGCAGGGG-----CGCCCUAAGUCCAUGGAGAGGAAAAUGGAUUUUCCUGCGAUGGAAGCAACCCAAAGGACUGGCCAAAAAG-GCGGAAUCAAUA ...((((((((.....((...((((((((.-----..))))...(((((.(..(((((((....))))))).).))))).)))).(((......))))).....)-)))).))).... ( -37.70) >DroEre_CAF1 77348 92 + 1 AAAGAUCCGCUGGGUAGGAAAACGCG--GG------GCUCUAAGUCCAUGGAGAGGAAAACGGAUUUGCCUGUGAUGGUAGCACCCCAAAGGA------------------AUCGGUG ...(((((..((((........((((--((------....(((((((..............))))))))))))).((....)).))))..)).------------------))).... ( -22.04) >DroYak_CAF1 78100 110 + 1 AAAGAUCCGCCGGAGAGGAAAUUGCGGGGG------GUUCCAAGUCCAUGGGGUGGAAAAUGGAUUUGCCUGUGAUGGGAGCACGCCAAAGGACUAGCCAAA-GG-GCGGCAUCAAUG ...((((((((((.......((..((((.(------(.((((..(((((...)))))...)))).)).))))..)).........))...((.....))...-.)-)))).))).... ( -36.99) >consensus AAAGAUCCGCCGGAGAGGAAAUUGCGGGGG______GCCCUAAGUCCAUGGAGAGGAAAAUGGAUUUUCCUGCGAUGGAAGCACCCCAAAGGACUGGCCAAAAAG_GCGGAAUCAAUA ...(((((((..........((((((((((........))(((((((((..........)))))))))))))))))((.......))...................)))).))).... (-20.32 = -21.32 + 1.00)
Location | 14,443,782 – 14,443,900 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -15.22 |
Energy contribution | -17.06 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.04 |
Mean z-score | -2.34 |
Structure conservation index | 0.52 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14443782 118 - 20766785 UAUUGAUUCCGCUCUUUUUGGCCAGUCCUUUGGGGUGCUUCCAUCGCAGGAAAAUCCAUUUUCCUCUCCAUGGACUUUGGACCCCCCCCCCCCGCAAUUUCCUCUCCGGCGGAUCUUU ....(((.(((((......((..(((((..((((((((.......)))((((((....)))))).))))).)))))..((......))............)).....))))))))... ( -29.80) >DroSec_CAF1 75812 111 - 1 UAUUGAUUCCGC-CUUUUUGGCCAGUCCUUUGGGUUGCUUCCAUCGCAGGAAAAUCCAUUUUCCUCUCCAUGGACUUAGGGC------CCCCCGCAAUUUCCUCUCCGGCGGAUCUUU ....(((.((((-(.....((((((....))))(((((.(((((.(.(((((((....)))))))..).)))))....(((.------..))))))))..)).....))))))))... ( -33.80) >DroSim_CAF1 77098 112 - 1 UAUUGAUUCCGC-CUUUUUGGCCAGUCCUUUGGGUUGCUUCCAUCGCAGGAAAAUCCAUUUUCCUCUCCAUGGACUUAGGGCG-----CCCCUGCAAUUUCCUCUCCGGCGGAUCUUU ....(((.((((-(......((((((((..((((.(((.......)))((((((....))))))..)))).)))))...)))(-----(....))............))))))))... ( -34.40) >DroEre_CAF1 77348 92 - 1 CACCGAU------------------UCCUUUGGGGUGCUACCAUCACAGGCAAAUCCGUUUUCCUCUCCAUGGACUUAGAGC------CC--CGCGUUUUCCUACCCAGCGGAUCUUU ....(((------------------((....(((((.(((((((...(((.(((.....))))))....))))...))).))------))--)((.............)))))))... ( -21.52) >DroYak_CAF1 78100 110 - 1 CAUUGAUGCCGC-CC-UUUGGCUAGUCCUUUGGCGUGCUCCCAUCACAGGCAAAUCCAUUUUCCACCCCAUGGACUUGGAAC------CCCCCGCAAUUUCCUCUCCGGCGGAUCUUU ....(((.((((-(.-....(((((....))))).(((..((......))....((((...((((.....))))..))))..------.....)))...........))))))))... ( -27.20) >consensus UAUUGAUUCCGC_CUUUUUGGCCAGUCCUUUGGGGUGCUUCCAUCGCAGGAAAAUCCAUUUUCCUCUCCAUGGACUUAGGGC______CCCCCGCAAUUUCCUCUCCGGCGGAUCUUU ....(((................(((((..((((((((.......)))((((((....)))))).))))).)))))...............((((.............)))))))... (-15.22 = -17.06 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:30 2006