Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,424,443 – 14,424,551 |
Length | 108 |
Max. P | 0.992248 |
Location | 14,424,443 – 14,424,551 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 74.62 |
Mean single sequence MFE | -29.67 |
Consensus MFE | -15.41 |
Energy contribution | -15.58 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.25 |
Mean z-score | -2.63 |
Structure conservation index | 0.52 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14424443 108 + 20766785 CUAUUCCUACCAGGGCGAACUCUAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUU---UCCACCGGGUCUUCCUUUUUCAUCAGCAUCAUGUUAAUGAAGGUGA ......((.((.(((((............)))))....((((.......)))).)).))...---..(((((((....)))..(((((.(((.....))).))))))))). ( -24.00) >DroSec_CAF1 56538 108 + 1 CUAUCCCCACCAGGGCGAACUCUAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUC---UCCACCGGUUCUUCCUUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA .......((((((((.(((((.....((((........))))............((..(...---.)..))))))).))))..(((((((((.....))))))))))))). ( -29.70) >DroSim_CAF1 56382 108 + 1 CUAUCCCCACCAGGGCGAACUCUAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUC---UCCACCGGUUCUUCCUUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA .......((((((((.(((((.....((((........))))............((..(...---.)..))))))).))))..(((((((((.....))))))))))))). ( -29.70) >DroYak_CAF1 58068 108 + 1 CUAACGCUACUAGAGCGUAUUCCACAAGCCGCUCGUAAGGAUACAUAUUAUCCAAACAGUUU---UCCUCCGUCUCUUCAGUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA ....(((((((.(((((..((....))..)))))((..(((((.....)))))..)))))..---..................(((((((((.....))))))))))))). ( -26.10) >DroMoj_CAF1 95535 111 + 1 CUACAAAAACGAGAGCAUAUUCCAAUAUGCGUUCGUUUGGAAACAUGCCCUGGUUGCAGUUCUUAUCCUCCAGCUCAGUGUUCUUCAUCAGCAUCAUGUCGAUGAAGGUGA ......(((((((.((((((....)))))).)))))))(....)..((.(((((((.((........)).)))).))).))((((((((.((.....)).))))))))... ( -31.50) >DroAna_CAF1 66027 111 + 1 CCACACCCACCAGGAUAUACUCCACCAUCCUCUCGCCCACAAACAUGUCGGGCAGGCAAUUGUCGUCCACCGCCUCGACCUGCUUCAUCAGCAUCAUGUUGAUGAAGCGGA ............((((..................(((((((....))).)))).(((....)))))))...........(((((((((((((.....))))))))))))). ( -37.00) >consensus CUAUCCCCACCAGGGCGAACUCCAUCAUCCGCUCAUUAGGAUACAUAUAAUCCAGGCAGUUC___UCCACCGGCUCUUCCUUUUUCAUCAGCAUCAUGUUGAUGAAGGUGA ............(((((............)))))...............................................(((((((((((.....)))))))))))... (-15.41 = -15.58 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:22 2006