Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,414,403 – 14,414,494 |
Length | 91 |
Max. P | 0.530046 |
Location | 14,414,403 – 14,414,494 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 73.62 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -5.79 |
Energy contribution | -6.18 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -2.51 |
Structure conservation index | 0.20 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14414403 91 + 20766785 GCC-----GCCUGGCUUCUUGGCUUCUUGGCUUCUCCUGGGAAUCAGGUUAG----CCUGGCUAGCACGAGAGUAACCAUAUUUCUUUGCUUCUUAAUAA ...-----(((.((((.(((((.((((..(......)..)))))))))..))----)).))).((((.(((((.........)))))))))......... ( -28.00) >DroSec_CAF1 46563 87 + 1 GCC-----GCCUGGCUUCUU--------GGCUUCUCCUGGGAAUCAGGUUAGCCAGCCUGGCUCGCACGAGAGCAGCCAUAUUUCUUUGCUUCUUAAUAA (((-----....)))....(--------((((((((.((.((..((((((....))))))..)).)).))))..)))))..................... ( -28.90) >DroSim_CAF1 49336 83 + 1 GCC-----GCCUGGCUUCAU--------GGCUUCUCCUGGGAAUCAGGUUAG----CCUGGCUCGCAGGAGAGCAGCCAUAUUUCUUUGCUUCUUAAUAA (((-----....)))...((--------(((((((((((.((..((((....----))))..)).)))))))..)))))).................... ( -35.50) >DroEre_CAF1 48341 95 + 1 GCCUGGCUGCCUGGCUUCCUGGCUUCUUGGCAUCUCCUGGGAAUCAGGUUAG----CCUGGCUGGC-CGGGCGAAACCAUAUUUCUUCGCUUCUUAAUAA (((((((((((.((((.(((((.((((..(......)..)))))))))..))----)).))).)))-)))))((((.....))))............... ( -42.40) >DroYak_CAF1 48166 87 + 1 GGC--------UGGCUUCCUGGCUUCUUGGCUUCUCCUGGGAAUCAGGUUAG----CCCGGCUCGC-CGGGAGAAACCAUAUUUCUUUGCUUCUUAAUAA (((--------..(....)..)))...(((.(((((((((((..(.((....----)).)..)).)-)))))))).)))..................... ( -29.10) >DroPer_CAF1 47830 82 + 1 GCAUG-CCGCACAGCCACAG--------CUAUUCUCCUGGGAAUCAGGUUAA----CUUCUCCGCC---GCCGCUACC--GCUCCUCCGCUUCUUAAUAA ((..(-(.((..(((....)--------)).....((((.....))))....----.......)).---)).((....--))......)).......... ( -12.50) >consensus GCC_____GCCUGGCUUCAU________GGCUUCUCCUGGGAAUCAGGUUAG____CCUGGCUCGC_CGAGAGCAACCAUAUUUCUUUGCUUCUUAAUAA ............(((................((((....))))(((((........)))))...........................)))......... ( -5.79 = -6.18 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:18 2006