Locus 4382

Sequence ID 2R_DroMel_CAF1
Location 14,405,931 – 14,406,027
Length 96
Max. P 0.848403
window7009

overview

Window 9

Location 14,405,931 – 14,406,027
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 77.90
Mean single sequence MFE -21.31
Consensus MFE -13.71
Energy contribution -14.15
Covariance contribution 0.45
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.64
SVM decision value 0.78
SVM RNA-class probability 0.848403
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14405931 96 - 20766785
ACAUGGUCGAUGAAGAGCUGCACUGCAACAAAAGGCGAGCACUUCGUUGUGCGGUAUCACACAUACAUAUGUAUGUAAGCAUAUGCAAAUUAAACU
..((.((((((((((.(((((.((........)))).))).)))))))).)).)).....((((((....))))))..((....)).......... ( -25.30)
>DroSec_CAF1 38035 75 - 1
ACAUGGUCGAUGAAGAGCUGCACUGCAACAAAAAGCCAGCACUUCGUUGGGUGGU---------------------AACCAUAUGCAAAUGGAACU
.(((..(((((((((.((((....((........)))))).))))))))))))..---------------------..((((......)))).... ( -20.00)
>DroSim_CAF1 40818 75 - 1
ACAUGGUCGAUGAAGAGCUGCACUGCAACAAAAAGCUAGCACUUCAUUGUGUGGU---------------------AACCAUAUGCAAAUGGAACU
.(((...((((((((.(((((.............)).))).)))))))).)))..---------------------..((((......)))).... ( -18.62)
>consensus
ACAUGGUCGAUGAAGAGCUGCACUGCAACAAAAAGCCAGCACUUCGUUGUGUGGU_____________________AACCAUAUGCAAAUGGAACU
.......((((((((.(((((.............)).))).)))))))).............................((((......)))).... (-13.71 = -14.15 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:17 2006