Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,387,684 – 14,387,775 |
Length | 91 |
Max. P | 0.924275 |
Location | 14,387,684 – 14,387,775 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 83.23 |
Mean single sequence MFE | -29.77 |
Consensus MFE | -16.52 |
Energy contribution | -16.27 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.20 |
Mean z-score | -2.58 |
Structure conservation index | 0.55 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14387684 91 + 20766785 UUUGCGUGCCUGGGCAUUGUCUAAAUGGUUUGGUGUGAGGAGGGGGGGUGGGGGGUGGGGGGAUCCUCUCCAUUUUCCAACCCACUUUGUG ....((..((..(.((((.....)))).)..))..))(.((((.(((.(((..(((((((((...)))))))))..))).))).)))).). ( -38.00) >DroSec_CAF1 19864 74 + 1 UUUGCGUGCCUGGGCAUUGUCUAAAUGGUUUGGUG-----------------GGUUGGGGGGAUCCCCUCCAUUUUCCAACCCACUUUGUG .....((((....))))..............((((-----------------(((((((((....)))........))))))))))..... ( -24.60) >DroSim_CAF1 23121 74 + 1 UUUGCGUGCCUGGGCAUUGUCUAAAUGCUUUGGUG-----------------GGUUGGGGGGAUCCCCUCCAUUUUCCAACCCACUUUGUG .......(((..((((((.....))))))..)))(-----------------(((((((((....)))........)))))))........ ( -27.40) >DroEre_CAF1 21635 72 + 1 UUUGCGUGCCUGGGCAUUGUCUAAAUGGUCUGGGG-----------------GG--AGGGGGAUCCCCCUCAUUUUCCAACCCACUUGGUG .....((((....))))...((((.(((..(((..-----------------((--(((((....))))))..)..)))..))).)))).. ( -29.10) >consensus UUUGCGUGCCUGGGCAUUGUCUAAAUGGUUUGGUG_________________GGUUGGGGGGAUCCCCUCCAUUUUCCAACCCACUUUGUG .....(((((.((.((((.....)))).)).))...................((.(((((((...)))))))....))....)))...... (-16.52 = -16.27 + -0.25)
Location | 14,387,684 – 14,387,775 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 83.23 |
Mean single sequence MFE | -22.75 |
Consensus MFE | -13.56 |
Energy contribution | -13.62 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.78 |
Structure conservation index | 0.60 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14387684 91 - 20766785 CACAAAGUGGGUUGGAAAAUGGAGAGGAUCCCCCCACCCCCCACCCCCCCUCCUCACACCAAACCAUUUAGACAAUGCCCAGGCACGCAAA ....((((((.((((.....((((.((...................)).)))).....)))).))))))......(((....)))...... ( -20.41) >DroSec_CAF1 19864 74 - 1 CACAAAGUGGGUUGGAAAAUGGAGGGGAUCCCCCCAACC-----------------CACCAAACCAUUUAGACAAUGCCCAGGCACGCAAA ......(((((((((........(((....)))))))))-----------------)))................(((....)))...... ( -22.70) >DroSim_CAF1 23121 74 - 1 CACAAAGUGGGUUGGAAAAUGGAGGGGAUCCCCCCAACC-----------------CACCAAAGCAUUUAGACAAUGCCCAGGCACGCAAA ......(((((((((........(((....)))))))))-----------------)))................(((....)))...... ( -22.70) >DroEre_CAF1 21635 72 - 1 CACCAAGUGGGUUGGAAAAUGAGGGGGAUCCCCCU--CC-----------------CCCCAGACCAUUUAGACAAUGCCCAGGCACGCAAA ....((((((.((((.....((((((....)))))--).-----------------..)))).))))))......(((....)))...... ( -25.20) >consensus CACAAAGUGGGUUGGAAAAUGGAGGGGAUCCCCCCAACC_________________CACCAAACCAUUUAGACAAUGCCCAGGCACGCAAA ......((((.((((........((((....)))).............................((((.....)))).)))).).)))... (-13.56 = -13.62 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:10 2006