Locus 4375

Sequence ID 2R_DroMel_CAF1
Location 14,379,770 – 14,379,885
Length 115
Max. P 0.600271
window6999

overview

Window 9

Location 14,379,770 – 14,379,885
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 90.70
Mean single sequence MFE -30.72
Consensus MFE -26.26
Energy contribution -26.94
Covariance contribution 0.68
Combinations/Pair 1.09
Mean z-score -1.30
Structure conservation index 0.85
SVM decision value 0.13
SVM RNA-class probability 0.600271
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14379770 115 - 20766785
UAUAUAGAGCUUGAAAUUGGUUCAAGGGGUGAAGGUCCACCGGAAAAGACGGAAUUUCCCUGGGGCAAUGAUGACCAGGAUCUUGAAGCAACAUUUUAAGUUUCUUAAGAUUUUU
..((..(((((((((((((.(((((((((((......)))).................(((((..((....)).))))).))))))).))..)))))))))))..))........ ( -32.50)
>DroSec_CAF1 12197 115 - 1
UAUAUUGAGCUUGAAAUCGGUUCGAGGGGUGAAGGCCCACCGGAAAAGAAGGAAUUUCCCUGGGGCAAUGAUGACCAGAAUCUUGAAGCAACAUUUUAAGUUUCUUAGGAUUUUU
..((..(((((((((((.(.((((((((((.(..((((...(((((........)))))...)))).....).)))....))))))).)...)))))))))))..))........ ( -30.10)
>DroSim_CAF1 14685 115 - 1
UAUAUAGAGCUUGAAAUCGGUUCGAGGGGUGAAGGCCCACCGGAAAAGAAGGAAUUUCCCUGGGGCAAUGAUGACCAGGAUCUUGAAGCAACAUUUUAAGUUUCUUACGAUUUUU
............(((((((.((((..((((....))))..)))).((((((.......(((((..((....)).)))))..(((((((.....))))))))))))).))))))). ( -30.40)
>DroEre_CAF1 13666 115 - 1
UAUAUAGAGCUUGAAAUCGGUUCAAAAGGUGAAGGUCCACCGGAAAAGAGCGAGUUUCCCUGGGGAAAUGAUGACCAGGGCCUUGAAGCAAUAAUUUAAGUUUCUUGCGAUUUUU
......(((((.......)))))....((((......)))).(((((..(((((...((((((...........)))))).((((((.......))))))...)))))..))))) ( -30.40)
>DroYak_CAF1 12610 115 - 1
UAUAUGGAGCUCGAAAUCGGUUCAAGAGGUGAAGGUCCACCGGAAAAGACAGAAUUUCCCUGGGGAAAUGAUGACCAGGAUCUUGAUGCGACAAUUUAAGUUUCUUACGAUUUUG
.....((((((..((.(((..((((((((((......))))........((..((((((....))))))..)).......))))))..)))...))..))))))........... ( -30.20)
>consensus
UAUAUAGAGCUUGAAAUCGGUUCAAGGGGUGAAGGUCCACCGGAAAAGAAGGAAUUUCCCUGGGGCAAUGAUGACCAGGAUCUUGAAGCAACAUUUUAAGUUUCUUACGAUUUUU
..((..(((((((((((.(.(((((((((((......))))(((((........)))))((((...........))))..))))))).)...)))))))))))..))........ (-26.26 = -26.94 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:07 2006