Locus 4374

Sequence ID 2R_DroMel_CAF1
Location 14,375,053 – 14,375,184
Length 131
Max. P 0.998881
window6997 window6998

overview

Window 7

Location 14,375,053 – 14,375,163
Length 110
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 75.14
Mean single sequence MFE -22.70
Consensus MFE -18.69
Energy contribution -18.80
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.82
SVM decision value 3.27
SVM RNA-class probability 0.998881
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14375053 110 + 20766785
C---------UUCUAUUUCCCUUCCACAUUUGUUAAAUAUUAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAACCACCUUACUGCAAAACCGUACUUAAAAUACGUUGACCUUU
.---------.....................(((((.((((((((....))))((((((.(((.(((((((((....))))))))).)))...)))))).....))))..))))).... ( -24.30)
>DroSec_CAF1 7517 117 + 1
CUUCCCCUCCUUCCCUUGCCCAUCCACAUUUGUUAACUAAUAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAAUCACCUUACAGCCA-ACUGCACUUAAAAUAUG-UGACCUCC
........................(((((...((((.......(((.((((......)))))))(((((((((....)))))))))(((...-.)))...))))...)))-))...... ( -22.60)
>DroSim_CAF1 7541 88 + 1
C-----------------------------UGUUAACUAAUAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAAUCACCUUACUGCCA-ACUGCACUUAAAAUAUG-UGACCUCC
.-----------------------------.........((((((.((((.....))))((((.(((((((((....))))))))).)))).-............)))))-)....... ( -21.20)
>consensus
C_________UUC__UU_CCC_UCCACAUUUGUUAACUAAUAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAAUCACCUUACUGCCA_ACUGCACUUAAAAUAUG_UGACCUCC
...............................((((....(((((((.((((......)))))))(((((((((....)))))))))...................))))..)))).... (-18.69 = -18.80 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 14,375,084 – 14,375,184
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 90.60
Mean single sequence MFE -27.78
Consensus MFE -22.85
Energy contribution -22.63
Covariance contribution -0.21
Combinations/Pair 1.17
Mean z-score -2.60
Structure conservation index 0.82
SVM decision value 0.77
SVM RNA-class probability 0.847059
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14375084 100 + 20766785
UAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAACCACCUUACUGCAAAACCGUACUUAAAAUACGUUGACCUUUUGUCGCCUUGCCAAUUUAAUA
.(((((.......((((((.(((.(((((((((....))))))))).)))...)))))).......))))).(((.....)))................. ( -25.64)
>DroSec_CAF1 7557 98 + 1
UAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAAUCACCUUACAGCCA-ACUGCACUUAAAAUAUG-UGACCUCCUGUCGGGUUGCUAAUUUAAAA
...((((((.((....((.(((..(((((((((....)))))))))(((...-.)))(((.........)-))))).))...)))))))).......... ( -27.80)
>DroSim_CAF1 7552 98 + 1
UAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAAUCACCUUACUGCCA-ACUGCACUUAAAAUAUG-UGACCUCCUGUCGGGUUGCUAAUUUAAAA
...((((((.((....(((((((.(((((((((....))))))))).)))).-....(((.........)-)))))......)))))))).......... ( -29.90)
>consensus
UAUGUAACCACGUUAUGGUGGUACUGAGGUGGUCCCAAUCACCUUACUGCCA_ACUGCACUUAAAAUAUG_UGACCUCCUGUCGGGUUGCUAAUUUAAAA
...((((((.((....((.(((..(((((((((....)))))))))..((......))...............))).))...)))))))).......... (-22.85 = -22.63 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:06 2006