Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,369,569 – 14,369,660 |
Length | 91 |
Max. P | 0.775266 |
Location | 14,369,569 – 14,369,660 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 76.52 |
Mean single sequence MFE | -34.01 |
Consensus MFE | -20.80 |
Energy contribution | -19.75 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.42 |
Mean z-score | -1.58 |
Structure conservation index | 0.61 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14369569 91 + 20766785 UCCGUACUCAAAAGCCACGCCCUCGAGCGGAGGCGUAAGGCGCAGGGUGCGAUUGAGACGCUCUUUCAAAUCAGCAAUGGUCUGCACAUGG--- .((((........((((((((..(....)..)))))..)))(((((.(((((((((((.....)))).)))).)))....)))))..))))--- ( -29.80) >DroPse_CAF1 3454 91 + 1 UCCGUACUCAAAGGCCACGCCCUCCAGUGGGGGAGUCAGGCGCAGAGUGCGAUUCAAGCGGGUAAACAAAUCCGUGAUGGUCUACGGAAGG--- (((((((((....(((((.(((((....))))).))..)))...))))))((((...((((((......))))))...))))...)))...--- ( -33.70) >DroEre_CAF1 3799 91 + 1 UCCGUACUCGAAGGCCACACCCUCGAGCGGAGGCGUAAGGCGCAGGGUGCGAUUCAGGCGGUCUUUCAGAUCAUCAAUGGUCUGUAGAGGA--- ..(((((((....(((..((((((.....)))).))..)))...)))))))..........((((((((((((....))))))).))))).--- ( -32.60) >DroYak_CAF1 3684 91 + 1 UCCGUACUCGAAAGCCACGCCCUCGAGCGGAGGCGUAAGGCGCAGGGUGCGAUUGAGACGCUCUUUCAGAUCAGCAAUGGUCUGUAGAUGG--- ..(((((((....((((((((..(....)..)))))..)))...))))))).......((.(((..(((((((....))))))).))))).--- ( -37.10) >DroAna_CAF1 3906 94 + 1 ACCGUACUCGAAGGCCACUCCCUCCAGUGGAGGGGUAAGCUUCAGGGGGCGGCUCAGAAGACUCUUCAAAUCGUCAAUGGUCUGGGUGCGGAAA .((((((((...((((((.((((((...))))))))..((((....))))))))....(((((...............)))))))))))))... ( -37.06) >DroPer_CAF1 3455 91 + 1 UCCGUACUCAAAGGCCACACCCUCCAGUGGGGGAGUGAGGCGCAGAGUGCGAUUCAAGCGAGUAAACAAAUCCGUGAUGGUCUACGGAAGG--- ..(((((((....(((.((((((((...))))).))).)))...)))))))((((....)))).......((((((......))))))...--- ( -33.80) >consensus UCCGUACUCAAAGGCCACGCCCUCCAGCGGAGGCGUAAGGCGCAGGGUGCGAUUCAGACGAUCUUUCAAAUCAGCAAUGGUCUGCAGAAGG___ ..(((((((....(((..((((((.....)))).))..)))...)))))))......................(((......)))......... (-20.80 = -19.75 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:04 2006