Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,367,904 – 14,368,011 |
Length | 107 |
Max. P | 0.564522 |
Location | 14,367,904 – 14,368,011 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -22.21 |
Consensus MFE | -13.79 |
Energy contribution | -16.47 |
Covariance contribution | 2.69 |
Combinations/Pair | 1.10 |
Mean z-score | -1.87 |
Structure conservation index | 0.62 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14367904 107 + 20766785 AACUUCACGCGUGUACCUGGCCCUAAAACAAGGUACCCUUUUCAGUAUUUUGUGUUUGCUGAGGUACAACAUUUAAAAAAUACCGAUAAUGAUAAAAAUUAAACUAU ...........((((((((((......(((((((((........)))))))))....))).)))))))....................................... ( -19.90) >DroSec_CAF1 2113 104 + 1 AACUUCGCACGUGUACCUGGCCCUAAAUCCAGGUACCCUUUCUAGUAUUUUGUGUUUGCUGAGGUAC---AUUUUAAAAAUACCGUUUAAGCUAAGAAAUAAACUAU ..(((.((..(.((((((((........)))))))).)......(((((((..((.(((....))).---))....))))))).......)).)))........... ( -21.70) >DroSim_CAF1 2115 104 + 1 AACUUCGCGCGUGUACCUGGCCCUAAAACCAGGUACCCUUUUUAGUAUUUUGUGUUUGCUCAGGUAC---ACUUUAAAAAUACCGUUUAAGCUAAGAAAUAAACCAU ..(((.((..(((((((((((......((.((((((........)))))).))....)).)))))))---)).(((((.......))))))).)))........... ( -24.40) >DroEre_CAF1 2076 106 + 1 AACUGAAUGCGUGUACCUGGCCCUAAAACACGGUACCCUAUUUAGUAUUUUGUGGUUUCUAAGGUACACCAUUUAAAAAAUACCGAUAAUGCUAAAAAAUA-ACUAU ...((((((.((((((((.........(((..((((........))))..)))........))))))))))))))..........................-..... ( -22.83) >consensus AACUUCACGCGUGUACCUGGCCCUAAAACAAGGUACCCUUUUUAGUAUUUUGUGUUUGCUGAGGUAC___AUUUAAAAAAUACCGAUAAAGCUAAAAAAUAAACUAU ..........(.((((((((........)))))))).)(((((((((((..((((((...(((........)))...))))))....)))))))))))......... (-13.79 = -16.47 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:03 2006