Locus 4371

Sequence ID 2R_DroMel_CAF1
Location 14,366,190 – 14,366,310
Length 120
Max. P 0.500000
window6994

overview

Window 4

Location 14,366,190 – 14,366,310
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.44
Mean single sequence MFE -38.47
Consensus MFE -25.44
Energy contribution -25.37
Covariance contribution -0.07
Combinations/Pair 1.47
Mean z-score -1.38
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14366190 120 - 20766785
CGCUCCACUAGUUUCUGGAGCACGGGCCUGGCAUCUGCCCCUGCCUUAGCAUCCUUGGCUUGAUGCUCCAACUUGUACAUGGCAUCGUCGAAGAGACGCUUUUGUACCUCCUUGGUUUCC
.((((((........))))))..((((..(((....)))...)))).((((((........))))))((((...(((((.(((...(((.....))))))..)))))....))))..... ( -37.50)
>DroVir_CAF1 395 120 - 1
CGCUCCACCAGCUUUUGGAGCACAGGCUUGGCAUCGGCAGCCGCUUUGACAUCCUUGGCCUGAUGCUCCAGCUUGUACAUGGCAUCAUCGAAGAGUCGUUUCUGCACCUCCUUGGUCUCG
.((((((........))))))(((((((.((((((((..((((............))))))))))).).))))))).....(((....(((....)))....)))(((.....))).... ( -38.80)
>DroGri_CAF1 396 120 - 1
CGAUCUACAAGUUUUUGGAGGAUCGGCUUGGCAUCGGACGCUGUCUGAACAUCUUUGGCCUGAUGCUCCAGCUUGUACAUGGCAUCGUCGAAGAGUCUCUUUUGAACCUCUUUGGUUUCG
((((((((((((...(((((.(((((((.((..((((((...))))))...))...)))).))).)))))))))))....)).))))((((((((..((....))..))))))))..... ( -40.70)
>DroWil_CAF1 401 120 - 1
CGUUCCACAAGCUUCUGUAGCACUGGUUUGGCAUCGCUUGCCGCCUUGACAUCUUUGGCCUGAUGUUCCAGCUUAUACAUGGCAUCGUCGAAGAGCCGCUUUUGCACUUCUUUGGUUUCU
..........(((..((((...((((...((((.....)))).....((((((........))))))))))....)))).)))....((((((((..((....))..))))))))..... ( -30.60)
>DroMoj_CAF1 396 120 - 1
CGCUCCACGAUCUUCUGGAGCAUUGGCUUUGCAUUCACAGCCGCCUGGACAUCCUUGGCCUGAUGCUCCAGCUUGUACAUGGCAUCAUCGAAGAGCCGCUUCUGCACCUCUUUGGUUUCG
.(((..((((....((((((((((((((.((....)).))))(((.((....))..)))..)))))))))).))))....)))...(((((((((..((....))..))))))))).... ( -43.20)
>DroAna_CAF1 396 120 - 1
CGCUCCACGAGCUUCUGCAGCACCGGCUUGGAGUCGGCAGCAACCUGGGCAUCCUUGGCCUGGUGCUCCAGCUUGUACAUGGCGUCGUCAAACAGCCGCUUCUGCACCUCUUUAGUUUCG
.((((...))))...(((((...(((((((..(.((.((((((.(((((((((........))))).)))).))))...)).)).)..))...)))))...))))).............. ( -40.00)
>consensus
CGCUCCACAAGCUUCUGGAGCACCGGCUUGGCAUCGGCAGCCGCCUGGACAUCCUUGGCCUGAUGCUCCAGCUUGUACAUGGCAUCGUCGAAGAGCCGCUUCUGCACCUCUUUGGUUUCG
.(((..((((((...((((((((.((((.(((..........)))...........)))).).)))))))))))))....)))....((((((((..((....))..))))))))..... (-25.44 = -25.37 +  -0.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:02 2006